plot_tree {GNET2} | R Documentation

## Plot the regression tree.

### Description

Plot the regression tree given the index of a module.

### Usage

    plot_tree(gnet_result, group_idx)

### Arguments

`gnet_result` | Results returned by gnet().
`group_idx` | Index of the module.

### Value

None

### Examples

    set.seed(1)
    init_group_num = 5
    init_method = 'boosting'
    exp_data <- matrix(rnorm(50*10),50,10)
    reg_names <- paste0('TF',1:5)
    rownames(exp_data) <- c(reg_names,paste0('gene',1:(nrow(exp_data)-length(reg_names))))
    colnames(exp_data) <- paste0('condition_',1:ncol(exp_data))
    se <- SummarizedExperiment::SummarizedExperiment(assays=list(counts=exp_data))
    gnet_result <- gnet(se,reg_names,init_method,init_group_num)
    plot_tree(gnet_result,group_idx=1)

[Package GNET2 version 1.8.0 Index]