GGPA-internal {GGPA} | R Documentation

## Internal GGPA objects

### Description

Internal GGPA objects.

### Details

These are not to be called by the user.

### Examples

    # Load the included simulation data
    data(simulation)

    # fit GGPA model with 200 iterations and a burn-in of 200 iterations
    # Note that we recommend more than 200 iterations in practice
    fit <- GGPA( simulation$pmat, nMain = 200, nBurnin = 200)

    # Association mapping with FDR of 0.1 and global control
    head(assoc( fit, FDR=0.1, fdrControl="global" ))

    # We may specift i = 1 and j = 2 if we are interested in that specific phenotype
    head(assoc( fit, FDR=0.1, fdrControl="global", i=1, j=2 ))

    # Plot model fit
    plot(fit)

[Package GGPA version 1.4.0 Index]