gdcExportNetwork {GDCRNATools} | R Documentation

## Export network for Cytoscape

### Description

Export nodes and edges of ce network for Cytoscape visualization

### Usage

    gdcExportNetwork(ceNetwork, net)

### Arguments

`ceNetwork` | a dataframe generated from `gdcCEAnalysis`
`net` | one of `'nodes'` and `'edges'`

### Value

A dataframe of nodes or edges

### Author(s)

Ruidong Li and Han Qu

### Examples

    ####### ceRNA network analysis #######
    ceOutput <- data.frame(lncRNAs=c('ENSG00000242125','ENSG00000242125',
                                    'ENSG00000245532'),
                        Genes=c('ENSG00000043355','ENSG00000109586',
                                    'ENSG00000144355'),
                        miRNAs=c('hsa-miR-340-5p','hsa-miR-340-5p',
                                'hsa-miR-320b,hsa-miR-320d,
                                hsa-miR-320c,hsa-miR-320a'),
                        Counts=c(1,1,4), stringsAsFactors=FALSE)
    ####### Export edges #######
    edges <- gdcExportNetwork(ceNetwork=ceOutput, net='edges')

    ####### Export nodes #######
    ## Not run: nodes <- gdcExportNetwork(ceNetwork=ceOutput, net='nodes')

[Package GDCRNATools version 1.13.1 Index]