fantom_download {GAPGOM} | R Documentation

## GAPGOM - fantom_download()

### Description

Downloads and unpacks fantom5 data of either human or mouse.

### Usage

    fantom_download(organism = "human", unpack = TRUE, noprompt = FALSE)

### Arguments

`organism` | Either "mouse" or "human". FANTOM5 only has these two as fully annotated+tpm normalized datasets.
`unpack` | Default=TRUE, if set to TRUE, file will be unpacked automatically.
`noprompt` | Default=FALSE, user prompt, if you are 100 download and have enough space, set this to TRUE.

### Details

This function downloads the whole fantom5 dataset and unpacks it. automatic unpacking can be turned off. The file is downloaded to a special caching directory, which will be returned on exit.

### Value

The resulting filename/location of the file or NULL if cancelled.

### Examples

    fantom_file <- fantom_download(organism = "mouse", noprompt = TRUE)

[Package GAPGOM version 1.8.0 Index]