process_Y {FEAST} | R Documentation

## Standard way to preprocess the count matrix. It is the QC step for the genes.

### Description

Standard way to preprocess the count matrix. It is the QC step for the genes.

### Usage

    process_Y(Y, thre = 2)

### Arguments

`Y` | A gene expression data (Raw count matrix)
`thre` | The threshold of minimum number of cells expressing a certain gene (default =2)

### Value

A processed gene expression matrix. It is not log transformed

### Examples

    data(Yan)
    YY = process_Y(Y, thre=2)

[Package FEAST version 1.0.0 Index]