rgDataSet-class {ENmix} | R Documentation

## Class `"rgDataSet"`

### Description

A class for storing Illumina methylation array raw intensity data of two color channels, and probe annotation infomation.

### Usage

    rgDataSet(Red = new("matrix"), Green = new("matrix"),
        NBeads = new("matrix"),rowData=new("DataFrame"),ictrl= new("DataFrame"),...)

### Arguments

`Red` | A matrix of Red channel intensity values with row for methylation probes and column for samples
`Green` | A matrix of Green channel intensity values with row for methylation probes and column for samples
`NBeads` | A matrix contains the number of beads used to generate intensity values on the Red and Green channels.
`rowData` | A dataframe contains probe annotation information
`ictrl` | A dataframe contais detailed information for Illumina internal control probes
`...` | other arguments for class SummarizedExperiment

### Value

An object of class `rgDataSet`

### Examples

    showClass("rgDataSet")

[Package ENmix version 1.28.8 Index]