B2M {ENmix} | R Documentation

## Converting methylation beta value to M value.

### Description

Convert methylation beta value to M value.

### Usage

    B2M(x)

### Arguments

`x` | An numeric matrix with values between 0 and 1

### Details

Methylation beta value is calculated as beta=M/(M+U+a). M is methylated intensity, U is unmethylated intensity, and a is a constant offset (by default , a=100). M value is calculated as M=log2((M+a)/(U+a)). M or U is usually greater than 1000, so a is negligible for most probes. if a=0, then M=log2(beta)/(1-beta).

### Value

A matrix of M values

### Author(s)

Zongli Xu

### Examples

    if (require(minfiData)){
    path <- file.path(find.package("minfiData"),"extdata")
    rgSet <- readidat(path = path,recursive = TRUE)
    mdat=getmeth(rgSet)
    beta=getB(mdat,"Illumina")
    m=B2M(beta)
    }

[Package ENmix version 1.28.8 Index]