addMutCol {ELMER} | R Documentation

## Adds mutation information to MAE

### Description

Adds mutation information to MAE

### Usage

    addMutCol(
      data,
      disease,
      genes,
      mutant_variant_classification = c("Frame_Shift_Del", "Frame_Shift_Ins",
        "Missense_Mutation", "Nonsense_Mutation", "Splice_Site", "In_Frame_Del",
        "In_Frame_Ins", "Translation_Start_Site", "Nonstop_Mutation")
    )

### Arguments

`data` | MAE object
`disease` | TCGA disease (LUSC, GBM, etc)
`genes` | list of genes to add information
`mutant_variant_classification` | List of mutant_variant_classification that will be consider a sample mutant or not.

### Examples

    ## Not run:
     data <- ELMER:::getdata("elmer.data.example") # Get data from ELMER.data
     data <- ELMER:::addMutCol(data, "LUSC","TP53")

    ## End(Not run)

[Package ELMER version 2.16.0 Index]