391f8a3899bc796bbed73c5b3212a2d8 *CITATION
dad2ce58ccd3bc872cee6e2ac7aeb058 *DESCRIPTION
ae644fcd49997d3efa297b417ab4100f *INDEX
d20ea267799438fa296bcf1191fcdcbc *Meta/Rd.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
d9160ed5c17b9f3c0320083889a97755 *Meta/hsearch.rds
4c0f078ec24e78356866b24614505edc *Meta/links.rds
6565d6907a6cd9b5edcdd7bc919333c2 *Meta/nsInfo.rds
99bab610120640f6c585e9546f026273 *Meta/package.rds
98d4fb151454df479aeb372cb55cc4ac *Meta/vignette.rds
cd06ca101906c87168e789504fdd80f3 *NAMESPACE
d6c68f1fe41ced6e98a766a3757313da *R/DiffLogo
c3d16f525cf2f85f8c78279b7b051296 *R/DiffLogo.rdb
61fdbd0612b7a4be180633582dd440f6 *R/DiffLogo.rdx
e27c8b408c4ec4b44194743158c837c0 *doc/DiffLogoBasics.R
68c883ea98ff6663d211382a28a0038c *doc/DiffLogoBasics.Rnw
91fd3e690cde52f04f9d4c8cba61cb6f *doc/DiffLogoBasics.pdf
187d017a70ac056aad2a2f75d7648a88 *doc/index.html
9e64524098dcc3547b0a5033d37a3984 *extdata/alignments/F-box_bacteria.seq.fa
b638c19a42f513e456205f9f25794d2f *extdata/alignments/F-box_fungi.seq.fa
9c3c87fdf80fefc6cf3d20485aa94743 *extdata/alignments/F-box_metazoa.seq.fa
81c829501e6d19ac9ebe29dc3eecf303 *extdata/alignments/F-box_viridiplantae.seq.fa
45eea31652c9bf73aff2c145ab10ce97 *extdata/alignments/Mad.txt
707dbdd70ccc0cc51590f505e03f6a70 *extdata/alignments/Max.txt
b411ab2abc76e3437ccd6e818df31d54 *extdata/alignments/Myc.txt
d6422185297c2583f4419f467aec0574 *extdata/alignments/calamodulin_1.txt
4d0f44df6595197edd2b21d3549b4e57 *extdata/alignments/calamodulin_2.txt
2cec07f111c114b62e74dc5fda6d5b17 *extdata/alignments/phosphorylation_1.txt
610cceb5049e7cca41221bce75f23d95 *extdata/alignments/phosphorylation_2.txt
c78d0348b409bfaf488df306859666da *extdata/alignments/ubiquitination_1.txt
cdce4193c5fadfe94bc64bd20fd082b5 *extdata/alignments/ubiquitination_2.txt
8c38fdb2ea172dabd1ab4c45ddf5a4cb *extdata/homer/CTCF_SatelliteElement_Zf_CD4.motif
774f4bdd1a44d8c272a63396d7e9456c *extdata/homer/CTCF_Zf_CD4.motif
eaaac1b0e8624dce03d814d29ab7a8ac *extdata/homer/Max.motif
fd5d4c365e7e5de7f31f2adcc8df2a53 *extdata/homer/c-Myc.motif
ccc5a3fef2d1a0e70be046cce43dc22e *extdata/pfm/ctcf_jaspar.pfm
6093b56d5f72163054afddfa7e1013e3 *extdata/pwm/GM12878.pwm
ac0ed6904d023f00b38f953060434399 *extdata/pwm/H1-hESC.pwm
5c049781855e3d08d476eb735e438438 *extdata/pwm/HUVEC.pwm
56e78321b415f4e5f39cb226ddb3915c *extdata/pwm/HeLa-S3.pwm
f340a2bd526bb8cfe484a06f41e0923e *extdata/pwm/HepG2.pwm
a55a478ca869b172f945c7e004de9aba *extdata/pwm/K562.pwm
7256e36aa113e2ef2f25345cdf816682 *extdata/pwm/MCF7.pwm
d7bade5c657d185fc7c4b7e15199183b *extdata/pwm/NHEK.pwm
1e417b7456962e38375fdb5de6c67bb4 *extdata/pwm/ProgFib.pwm
5de7d4fd044eee2848cb872a118b5552 *help/ASN.html
62dc294f283bf63c2f7a8b22ac659751 *help/Alphabet.html
d1d4f1b8a6f4aa46a8181c7d85f2d199 *help/AnIndex
5cd411d3e7ee4d8de5362c0ea96489ac *help/DNA.html
9b5098b8d4f5d0f42149e7229cbdccae *help/DiffLogo.rdb
5e20c25bb2a66b46eaf340fa654aafdb *help/DiffLogo.rdx
4628f1100df3f59316ca786aea1e8f37 *help/FULL_ALPHABET.html
fbb1362718aebb4ba0535b44166d16d2 *help/RNA.html
276b1f88a66ee9c442bcc413ca5878b6 *help/aliases.rds
04909e18980616f181804a53c99db28e *help/alignPwmSets.html
3c0049666c97c3d89f12b78bdefb0600 *help/baseDistributionPwm.html
bccf1cd5f36c4e8f27fed5c6389665dc *help/calculatePvalue.html
690864c90d9d1e4ece74163f9899af6c *help/createDiffLogoObject.html
ee1264d895101e0a8a2f0fa8ac9af60a *help/diffLogo.html
391734f0cae19606c6cdf040ef8141fe *help/diffLogoFromPwm.html
5653ca02c71cac5d97abde1462f0f466 *help/diffLogoTable.html
9b2633230cd5f1a66af04d80e68b8bcc *help/diffLogoTableConfiguration.html
d543d73b6d305df06fc36b6442da54ac *help/differenceOfICs.html
6d6c42d3e9097fbf30d8a829fe261772 *help/drawDiffLogoTable.html
13ee81fd44599ff1f82b6f753c98a988 *help/enrichDiffLogoObjectWithPvalues.html
bbf963e427c9fda95a4a1b39f62ba538 *help/enrichDiffLogoTableWithPvalues.html
132774c28fe45b35f0496c25e8e1b8b1 *help/extendPwmsFromAlignmentVector.html
bafc05316d77b5cbb73b0067d852e514 *help/getAlphabetFromCharacters.html
edfd2d0f2ca2c06b84b4108d97857b5a *help/getAlphabetFromSequences.html
8cffb4e35162d2ba592335b28ba25aef *help/getPwmFromAlignment.html
7bf892463839af2464b980098d5e54d7 *help/getPwmFromAlignmentFile.html
1d9020b033f1a182479f23982344eb8a *help/getPwmFromFastaFile.html
061bf86d49b042dbbdf67fdb2a7e5a1a *help/getPwmFromFile.html
2a6a6f08e00b4456073d8eea00b674cd *help/getPwmFromHomerFile.html
b1dd560c280c1f5b5dea2d95f10e47f6 *help/getPwmFromPfmOrJasparFile.html
b1a810d0cc862a2e65ffb380204b1ae1 *help/getPwmFromPwmFile.html
b66ac677ebb294065efbb9f38ade6d54 *help/getSequencesFromAlignmentFile.html
5e7ad7a7ee9bf750066a9b0e4a2be151 *help/getSequencesFromFastaFile.html
0398bfb6303a58db129b2103f5c370b3 *help/informationContent.html
ee14f2de8a6cf9e9a1bbc4e6064c6a61 *help/localPwmAlignment.html
32a2984d892cd7d6775c008cbcf60fc3 *help/lossOfAbsICDifferences.html
706fd5ca807bea1901d69477d617cec6 *help/multipleLocalPwmsAlignment.html
e57a85f4fe1af16cefbe4f4588abf6ef *help/normalizePWM.html
f19f4e0efb8af44c786d86d321838321 *help/normalizedDifferenceOfProbabilities.html
648d4e3fc724bf7a9c18d02ce7c88000 *help/paths.rds
5569386fa3babae98dbf107c21af2d7b *help/prepareDiffLogoTable.html
e19d0b23609c65c1c9e66d50a2cb3055 *help/probabilities.html
fa2efa1aaabad58e99de2c3afb40b62e *help/pwmDivergence.html
93c91cc524b82d668eb50bdc738040cb *help/pwmsDistanceMatrix.html
cfc034ae29499d696aa3c61aced6b1be *help/reverseAlignmentVector.html
2f63632cae52e368f92d161b99f8897d *help/seqLogo.html
8959138156818984950d177172b603a9 *help/shannonDivergence.html
e4b20a1baa8c6cf7b7279ff0f6ac61c9 *help/sumOfAbsICDifferences.html
e650e26aa22475b645bbcbcfc740e7e6 *help/sumOfAbsProbabilityDifferences.html
fc4f57101d8689f9abba21208b5f0b74 *help/sumProbabilities.html
6ef15057424505a372b2492ce7c87bbb *help/switchDirection.html
7c388c888eada51b30165487ca5b4c4e *help/twoSetsAveragePwmDivergenceFromAlignmentVector.html
83425ef3bd186b3daa02811eecbd1f4c *html/00Index.html
06da0cee8bd0fb4f0304a3ce8637e044 *html/ASN.html
313d090e358a554e49bfd190f961b5fa *html/Alphabet.html
90e151eb81bcf311fa4adf238833661e *html/DNA.html
cf7dfe8973a9f1d719e526d753384031 *html/FULL_ALPHABET.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
57d140c13f297b089f693d8bcd7a3379 *html/RNA.html
316f9316885c7b93ea51952777116aa9 *html/alignPwmSets.html
248e4088c89349a08686b375db7ad04c *html/baseDistributionPwm.html
e5b7ec92a17fb57eb969f512d81479f1 *html/calculatePvalue.html
b770d9628c7c9d19129cc773e28b36cf *html/createDiffLogoObject.html
9ba0575eeb0c597ed355ead1a603dfcb *html/diffLogo.html
0a9634c003b156f004708700e660456f *html/diffLogoFromPwm.html
701e09a35caaaaf17bc0d0dcdde32642 *html/diffLogoTable.html
c27fbee77183e5b7b81184d69748ec3e *html/diffLogoTableConfiguration.html
d4231e7468a6810d5f8bf3d22233ff0a *html/differenceOfICs.html
5b60dbe1b055b68230a26ddf3163c738 *html/drawDiffLogoTable.html
3e25cbd0a578b98396c6953e446f239d *html/enrichDiffLogoObjectWithPvalues.html
5febaff6425713f98f374fe9efc3c90a *html/enrichDiffLogoTableWithPvalues.html
f07746dbe1c350be9922ddddf89a1e09 *html/extendPwmsFromAlignmentVector.html
187eeb00e01f4b65426341476853bac8 *html/getAlphabetFromCharacters.html
d2b25ee004c71e7bee0a42faee2e42fc *html/getAlphabetFromSequences.html
d85f61397ba6b204e30c7bfd3855b8e7 *html/getPwmFromAlignment.html
eaab0150a504dc610ad4c002fada245a *html/getPwmFromAlignmentFile.html
1e42c9afb72e7c1ce92821cd90c378ac *html/getPwmFromFastaFile.html
6dead14bc7d5adf8c0bc12eca664cdbe *html/getPwmFromFile.html
b62fdea4adab8b1b0be7869482014884 *html/getPwmFromHomerFile.html
319c540a094e0306d3a73359dc11a307 *html/getPwmFromPfmOrJasparFile.html
18cf2a131c8907b0214dff0039a5aa32 *html/getPwmFromPwmFile.html
b79764f97427cb0e9141879153139309 *html/getSequencesFromAlignmentFile.html
c963d441a2469485ac8c0400d549b91d *html/getSequencesFromFastaFile.html
b0a21a990c74a974f9c37d470e5ce6c4 *html/informationContent.html
1643a7b38fac8d68d21a944b11e89a95 *html/localPwmAlignment.html
1697d32ea744a542ef7d66c1cc0714f7 *html/lossOfAbsICDifferences.html
83d3e84d958ffdce5ad265daf442ac56 *html/multipleLocalPwmsAlignment.html
3332ef5c13ba2aa5f4efc64e5d732c1f *html/normalizePWM.html
5e38e6d0c8e8ce1cdea63e41db6c97a6 *html/normalizedDifferenceOfProbabilities.html
b70af246048bacfa81d7a5adf0540a3b *html/prepareDiffLogoTable.html
2f27fa641e481e08c0141e122aea06cd *html/probabilities.html
547b0ac1cb4f5da0e4aab861b2d41514 *html/pwmDivergence.html
f5ae56f57de187e693f522ee37557115 *html/pwmsDistanceMatrix.html
1f4c72a427f95900b98b5896926a2c48 *html/reverseAlignmentVector.html
c73e2403e3a8777ce23562c16c0568b8 *html/seqLogo.html
3f7ba63889863db3eb9ee2bc9b14af1d *html/shannonDivergence.html
7f269de7d161faac1184a346efcf9bfe *html/sumOfAbsICDifferences.html
5f58b313b5e432ad73e47d9030f0f14f *html/sumOfAbsProbabilityDifferences.html
e9d83a69a68571dde66144cc386f78e1 *html/sumProbabilities.html
dc728d0e95401d60c3183e195367590f *html/switchDirection.html
6c18c24b041442d14b8dd6d78c7a2459 *html/twoSetsAveragePwmDivergenceFromAlignmentVector.html
