DBA tamoxifen resistance dataset {DiffBind} | R Documentation

## Tamoxifen resistance dataset used for DBA examples

### Description

Tamoxifen resistance dataset used for DBA examples

### Usage

    data(tamoxifen_peaks)

    data(tamoxifen_counts)

    data(tamoxifen_analysis)

    data(tamoxifen_greylist)

### Arguments

`tamoxifen_peaks` | load tamoxifen resistance dataset DBA object with peak (occupancy) data
`tamoxifen_counts` | load tamoxifen resistance dataset DBA object with count (affinity) data. Also includes background bins counts for background normalization.
`tamoxifen_analysis` | load tamoxifen resistance dataset DBA object with count (affinity) data and `DESeq2`-based differential binding analysis results. This analysis uses a blacklists, computed greylists, background normalization, and a two-factor design.
`tamoxifen_greylist` | load greylist for tamoxifen dataset. Generated as shown in `dba.blacklist` example: `dba.blacklist`.

### Details

The tamoxifen resistance dataset is used for the DBA vignette and man page examples.

Data used to create these objects can be downloaded at https://content.cruk.cam.ac.uk/bioinformatics/software/DiffBind/DiffBind_vignette_data.tar.gz.

### Value

loads a DBA object named `tamoxifen` (or `tamoxifen.greylist`).

### Note

The script for generating these files (`GenerateDataFiles.R`) is included with the package in the `inst/extras` directory.

### Author(s)

Rory Stark

### Examples

    data(tamoxifen_peaks)
    tamoxifen
    data(tamoxifen_counts)
    plot(tamoxifen)
    data(tamoxifen_analysis)
    dba.plotMA(tamoxifen)
    data(tamoxifen_greylist)
    tamoxifen.greylist$master

[Package DiffBind version 3.2.7 Index]