Sun2011 {DTA} | R Documentation

## Saccharomyces Cerevisiae rpb1-N488D (Slow Polymerase) and wild-type cDTA experiment from Sun et al.

### Description

R object contains all relevant *.RData files needed for the `DTA.estimate` function. For example, see Schwalb et al.

### Usage

    Sun2011

### Format

R object contains the following *.RData files: `Raw.datamat` `Sp.affy.reliable` `Sc.affy2ensg` `Wt.phenomat` `Pol.phenomat` `Sc.ensg.reliable` `Sc.tnumber`

### Source

M. Sun, B. Schwalb, D. Schulz, N. Pirkl, L. Lariviere, K. Maier, A. Tresch, P. Cramer. Mutual feedback between mRNA synthesis and degradation buffers transcript levels in a eukaryote. Under review. B. Schwalb, B. Zacher, S. Duemcke, D. Martin, P. Cramer, A. Tresch. Measurement of genome-wide RNA synthesis and decay rates with Dynamic Transcriptome Analysis (DTA/cDTA). Bioinformatics. E. Birney, D. Andrews, M. Caccamo, Y. Chen, L. Clarke, G. Coates, T. Cox, F. Cunningham, V. Curwen, T. Cutts, T. Down, R. Durbin, X. M. Fernandez-Suarez, P. Flicek, S. Graef, M. Hammond, J. Herrero, K. Howe, V. Iyer, K. Jekosch, A. Kaehaeri, A. Kasprzyk, D. Keefe, F. Kokocinski, E. Kulesha, D. London, I. Longden, C. Melsopp, P. Meidl, B. Overduin, A. Parker, G. Proctor, A. Prlic, M. Rae, D. Rios, S. Redmond, M. Schuster, I. Sealy, S. Searle, J. Severin, G. Slater, D. Smedley, J. Smith, A. Stabenau, J. Stalker, S. Trevanion, A. Ureta- Vidal, J. Vogel, S. White, C.Woodwark, and T. J. Hubbard. Ensembl 2006. Nucleic acids research, 34(Database issue), January 2006.

[Package DTA version 2.38.0 Index]