Sc.phenomat {DTA} | R Documentation

## Design of the Saccharomyces Cerevisiae wild-type DTA experiment from Miller et al.

### Description

The phenotype matrix `Sc.phenomat` contains information about the experimental design. It is comprised of the filename, the type of RNA fraction measured (T, U or L), the labeling time and the replicate number.

### Usage

    Sc.phenomat

### Format

The phenomat is a matrix comprised of the file name, the type of RNA fraction mesasured (T, U or L, `fraction` column), the labeling time (`time`,`timeframe` column) and the replicate number (`nr` column). Rows in this matrix represent the individual experiments.

### Source

C. Miller, B. Schwalb, K. Maier, D. Schulz, S. Duemcke, B. Zacher, A. Mayer, J. Sydow, L. Marcinowski, L. Doelken, D. E. Martin, A. Tresch, and P. Cramer. Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast. Mol Syst Biol, 7:458, 2011.

[Package DTA version 2.38.0 Index]