GSEA_internal {DOSE} | R Documentation

## GSEA_internal

### Description

generic function for gene set enrichment analysis

### Usage

    GSEA_internal(
      geneList,
      exponent,
      minGSSize,
      maxGSSize,
      eps,
      pvalueCutoff,
      pAdjustMethod,
      verbose,
      seed = FALSE,
      USER_DATA,
      by = "fgsea",
      ...
    )

### Arguments

`geneList` | order ranked geneList
`exponent` | weight of each step
`minGSSize` | minimal size of each geneSet for analyzing
`maxGSSize` | maximal size of each geneSet for analyzing
`eps` | This parameter sets the boundary for calculating the p value.
`pvalueCutoff` | p value Cutoff
`pAdjustMethod` | p value adjustment method
`verbose` | print message or not
`seed` | set seed inside the function to make result reproducible. FALSE by default.
`USER_DATA` | annotation data
`by` | one of 'fgsea' or 'DOSE'
`...` | other parameter

### Value

gseaResult object

### Author(s)

Yu Guangchuang

[Package DOSE version 3.18.3 Index]