plotDispEsts {DEXSeq} | R Documentation

## Plot dispersion estimates

### Description

A simple helper function that plots the per-gene dispersion estimates together with the fitted mean-dispersion relationship. Internally, it is a wrapper for the pltoDispEsts method from DESeq2.

### Usage

    ## S4 method for signature 'DEXSeqDataSet'
    plotDispEsts(object, ymin,
      genecol = "black", fitcol = "red", finalcol = "dodgerblue",
      legend=TRUE, xlab, ylab, log = "xy", cex = 0.45, ...)

### Arguments

`object` | a DESeqDataSet
`ymin` | the lower bound for points on the plot, points beyond this are drawn as triangles at ymin
`genecol` | the color for gene-wise dispersion estimates
`fitcol` | the color of the fitted estimates
`finalcol` | the color of the final estimates used for testing
`legend` | logical, whether to draw a legend
`xlab` | xlab
`ylab` | ylab
`log` | log
`cex` | cex
`...` | further arguments to `plot`

[Package DEXSeq version 1.38.0 Index]