computeZ {DEScan2} | R Documentation

## computeZ

### Description

Computes Z-Scores returning the z matrix.

### Usage

    computeZ(
      lambdaChrRleList,
      runWinRleList,
      chrLength,
      minCount = 0.1,
      binSize = 50,
      verbose = FALSE
    )

### Arguments

`lambdaChrRleList` | an RleList of lambda values computed by computeLambdaOnChr function each element of the list is an Rle representing the lambda for the moving window in the list position.
`runWinRleList` | an RleList of coverage values computed. by computeCoverageMovingWindowOnChr function each element of the list is an Rle representing the coverage for the moving window in the list position.
`chrLength` | the length of the chr in analysis.
`minCount` | A small constant (usually no larger than one) to be added to the counts prior to the log transformation to avoid problems with log(0).
`binSize` | the size of the bin.
`verbose` | verbose output.

### Value

z a matrix of z scores for each window (column) and bin (row). where the rownames represent the starting base of each bin.

[Package DEScan2 version 1.12.0 Index]