degMean {DEGreport} | R Documentation

## Distribution of pvalues by expression range

### Description

This function plot the p-values distribution colored by the quantiles of the average count data.

### Usage

    degMean(pvalues, counts)

### Arguments

`pvalues` | pvalues of DEG analysis.
`counts` | Matrix with counts for each samples and each gene. row number should be the same length than pvalues vector.

### Value

ggplot2 object

### Examples

    data(humanGender)
    library(DESeq2)
    idx <- c(1:10, 75:85)
    dds <- DESeqDataSetFromMatrix(assays(humanGender)[[1]][1:1000, idx],
      colData(humanGender)[idx,], design=~group)
    dds <- DESeq(dds)
    res <- results(dds)
    degMean(res[, 4], counts(dds))

[Package DEGreport version 1.28.0 Index]