Get_AllComparisons {DAPAR} | R Documentation

## Returns list that contains a list of the statistical tests performed with DAPAR and recorded in an object of class `MSnSet`.

### Description

This method returns a list of the statistical tests performed with DAPAR and recorded in an object of class `MSnSet`.

### Usage

    Get_AllComparisons(obj)

### Arguments

`obj` | An object of class `MSnSet`.

### Value

A list of two slots: logFC and P_Value

### Author(s)

Samuel Wieczorek

### Examples

    utils::data(Exp1_R25_prot, package='DAPARdata')
    obj <- Exp1_R25_prot[1:1000]
    level <- GetTypeofData(obj)
    metacell.mask <- match.metacell(GetMetacell(obj), 'missing', level)
    indices <- GetIndices_WholeMatrix(metacell.mask, op='>=', th=1)
    obj <- MetaCellFiltering(obj, indices, cmd='delete')
    qData <- Biobase::exprs(obj$new)
    sTab <- Biobase::pData(obj$new)
    allComp <- limmaCompleteTest(qData,sTab)
    data <- list(logFC=allComp$logFC[1], P_Value = allComp$P_Value[1])
    obj$new <- diffAnaSave(obj$new, allComp, data)
    ll <- Get_AllComparisons(obj$new)

[Package DAPAR version 1.24.8 Index]