hc_mvTypePlot2 {DAPAR} | R Documentation

## Distribution of Observed values with respect to intensity values

### Description

This method shows density plots which represents the repartition of Partial Observed Values for each replicate in the dataset. The colors correspond to the different conditions (slot Condition in in the dataset of class `MSnSet`). The x-axis represent the mean of intensity for one condition and one entity in the dataset (i. e. a protein) whereas the y-axis count the number of observed values for this entity and the considered condition.

### Usage

    hc_mvTypePlot2(obj, pal = NULL, pattern, typeofMV = NULL, title = NULL)

### Arguments

`obj` | xxx
`pal` | The different colors for conditions
`pattern` | xxx
`typeofMV` | xxx
`title` | The title of the plot

### Value

Density plots

### Author(s)

Samuel Wieczorek

### Examples

    utils::data(Exp1_R25_pept, package='DAPARdata')
    obj <- Exp1_R25_pept[1:100]
    hc_mvTypePlot2(obj, pattern = 'missing MEC', title="POV distribution")
    conds <- Biobase::pData(obj)$Condition
    pal <- ExtendPalette(length(unique(conds)), 'Dark2')
    hc_mvTypePlot2(obj, pattern = 'missing MEC', title="POV distribution", pal=pal)

[Package DAPAR version 1.24.8 Index]