wrapper.heatmapD {DAPAR} | R Documentation

## This function is a wrapper to `heatmap.2` that displays quantitative data in the `exprs()` table of an object of class `MSnSet`

### Description

Builds a heatmap of the quantitative proteomic data of a `MSnSet` object.

### Usage

    wrapper.heatmapD(
      obj,
      distance = "euclidean",
      cluster = "complete",
      dendro = FALSE
    )

### Arguments

`obj` | An object of class `MSnSet`.
`distance` | The distance used by the clustering algorithm to compute the dendrogram. See `help(heatmap.2)`.
`cluster` | the clustering algorithm used to build the dendrogram. See `help(heatmap.2)`
`dendro` | A boolean to indicate fi the dendrogram has to be displayed

### Value

A heatmap

### Author(s)

Alexia Dorffer

### Examples

    ## Not run:
    utils::data(Exp1_R25_pept, package='DAPARdata')
    obj <- Exp1_R25_pept[1:10]
    level <- obj@experimentData@other$typeOfData
    metacell.mask <- match.metacell(GetMetacell(obj), 'missing', level)
    indices <- GetIndices_WholeLine(metacell.mask)
    wrapper.heatmapD(obj)

    ## End(Not run)

[Package DAPAR version 1.24.8 Index]