wrapperCalibrationPlot {DAPAR} | R Documentation

## Performs a calibration plot on an `MSnSet` object, calling the `cp4p` package functions.

### Description

This function is a wrapper to the calibration.plot method of the `cp4p` package for use with `MSnSet` objects.

### Usage

    wrapperCalibrationPlot(vPVal, pi0Method = "pounds")

### Arguments

`vPVal` | A dataframe that contains quantitative data.
`pi0Method` | A vector of the conditions (one condition per sample).

### Value

A plot

### Author(s)

Samuel Wieczorek

### Examples

    utils::data(Exp1_R25_prot, package='DAPARdata')
    obj <- Exp1_R25_prot[1:1000]
    level <- obj@experimentData@other$typeOfData
    metacell.mask <- match.metacell(GetMetacell(obj), 'missing', level)
    indices <- GetIndices_WholeMatrix(metacell.mask, op='>=', th=1)
    obj <- MetaCellFiltering(obj, indices, cmd='delete')
    qData <- Biobase::exprs(obj$new)
    sTab <- Biobase::pData(obj$new)
    limma <- limmaCompleteTest(qData,sTab)
    wrapperCalibrationPlot(limma$P_Value[,1])

[Package DAPAR version 1.24.8 Index]