metacell.def {DAPAR} | R Documentation

## Metadata vocabulary for entities

### Description

This function gives the vocabulary used for the metadata of each entity in each condition. Peptide-level vocabulary

|– 1.0 Quantitative Value | | | |– 1.1 Identified (color 4, white) | | | |– 1.2 Recovered (color 3, lightgrey) | |– 2.0 Missing value (no color) | | | |– 2.1 Missing POV (color 1) | | | |– 2.2 Missing MEC (color 2) | |– 3.0 Imputed value | | | |– 3.1 Imputed POV (color 1) | | | |– 3.2 Imputed MEC (color 2)

Protein-level vocabulary:

|– 1.0 Quantitative Value | | | |– 1.1 Identified (color 4, white) | | | |– 1.2 Recovered (color 3, lightgrey) | |– 2.0 Missing value | | | |– 2.1 Missing POV (color 1) | | | |– 2.2 Missing MEC (color 2) | |– 3.0 Imputed value | | | |– 3.1 Imputed POV (color 1) | | | |– 3.2 Imputed MEC (color 2) | |– 4.0 Combined value (color 3bis, light-lightgrey)

### Usage

    metacell.def(level)

### Arguments

`level` | A string designing the type of entity/pipeline. Available values are: 'peptide', 'protein'

### Author(s)

Thomas Burger, Samuel Wieczorek

[Package DAPAR version 1.24.8 Index]