SetCC {DAPAR} | R Documentation

## Returns the connected components

### Description

Returns the connected components

### Usage

    SetCC(obj, cc)

### Arguments

`obj` | An object (peptides) of class `MSnSet`.
`cc` | The connected components list

### Author(s)

Samuel Wieczorek

### Examples

    utils::data(Exp1_R25_pept, package='DAPARdata')
    Xshared <- BuildAdjacencyMatrix(Exp1_R25_pept[1:1000], "Protein_group_IDs", FALSE)
    Xunique <- BuildAdjacencyMatrix(Exp1_R25_pept[1:1000], "Protein_group_IDs", TRUE)
    ll.X <- list(matWithSharedPeptides = Xshared, matWithUniquePeptides = Xunique)
    Exp1_R25_pept <- SetMatAdj(Exp1_R25_pept, ll.X)
    ll1 <- get.pep.prot.cc(GetMatAdj(Exp1_R25_pept)$matWithSharedPeptides)
    ll2 <- DAPAR::get.pep.prot.cc(GetMatAdj(Exp1_R25_pept)$matWithUniquePeptides)
    cc <- list(allPep = ll1, onlyUniquePep = ll2)
    Exp1_R25_pept <- SetCC(Exp1_R25_pept, cc)

[Package DAPAR version 1.24.8 Index]