Metacell_maxquant {DAPAR} | R Documentation

## Sets the metacell dataframe

### Description

Initial conversion rules for maxquant |————|———————–|——–| | Quanti | Identification | Tag | |————|———————–|——–| | == 0 | whatever | 2.0 | | > 0 | 'By MS/MS' | 1.1 | | > 0 | 'By matching' | 1.2 | | > 0 | unknown col | 1.0 | |————|———————–|——–|

### Usage

    Metacell_maxquant(qdata, conds, df, level = NULL)

### Arguments

`qdata` | An object of class `MSnSet`
`conds` | xxx
`df` | A list of integer xxxxxxx
`level` | xxx

### Value

xxxxx

### Author(s)

Samuel Wieczorek

### Examples

    file <- system.file("extdata", "Exp1_R25_pept.txt", package="DAPARdata")
    data <- read.table(file, header=TRUE, sep="\t",stringsAsFactors = FALSE)
    metadataFile <- system.file("extdata", "samples_Exp1_R25.txt",
    package="DAPARdata")
    metadata <- read.table(metadataFile, header=TRUE, sep="\t", as.is=TRUE,
    stringsAsFactors = FALSE)
    conds <- metadata$Condition
    qdata <- data[1:10,56:61]
    df <- data[1:10 , 43:48]
    df2 <- Metacell_maxquant(qdata, conds, df, level='peptide')

[Package DAPAR version 1.24.8 Index]