import_count_input_files {ChromSCape} | R Documentation

## Import and count input files depending on their format

### Description

Import and count input files depending on their format

### Usage

    import_count_input_files(
      files_dir_list,
      file_type,
      which,
      ref,
      verbose,
      progress,
      BPPARAM = BiocParallel::bpparam()
    )

### Arguments

`files_dir_list` | A named list of directories containing the input files.
`file_type` | Input file type.
`which` | A GRanges object of features.
`ref` | Reference genome.
`verbose` | Print ?
`progress` | A progress object for Shiny.
`BPPARAM` | BPPARAM object for multiprocessing. See bpparam for more informations. Will take the default BPPARAM set in your R session.

### Value

A list with the feature indexes data.frame containing non-zeroes entries in the count matrix and the cell names

[Package ChromSCape version 1.2.62 Index]