DA_one_vs_rest_fun {ChromSCape} | R Documentation

## Differential Analysis in 'One vs Rest' mode

### Description

Differential Analysis in 'One vs Rest' mode

### Usage

    DA_one_vs_rest_fun(
      affectation,
      nclust,
      counts,
      method,
      feature,
      block,
      progress = NULL,
      BPPARAM = BiocParallel::bpparam()
    )

### Arguments

`affectation` | An annotation data.frame with cell_id and cell_cluster columns
`nclust` | Number of clusters
`counts` | Count matrix
`method` | DA method : Wilcoxon or EdgeR
`feature` | Feature tables
`block` | Blocking feature
`progress` | A shiny Progress instance to display progress bar.
`BPPARAM` | BPPARAM object for multiprocessing. See bpparam for more informations. Will take the default BPPARAM set in your R session.

### Value

A list of results, groups compared and references

[Package ChromSCape version 1.2.62 Index]