feature_annotation_scExp {ChromSCape} | R Documentation

## Add gene annotations to features

### Description

Add gene annotations to features

### Usage

    feature_annotation_scExp(scExp, ref = "hg38", reference_annotation = NULL)

### Arguments

`scExp` | A SingleCellExperiment object.
`ref` | Reference genome. Either 'hg38' or 'mm10'. ('hg38')
`reference_annotation` | A data.frame containing gene (or else) annotation with genomic coordinates.

### Value

A SingleCellExperiment object with annotated rowData.

### Examples

    scExp = create_scExp(create_scDataset_raw()$mat,create_scDataset_raw()$annot)
    scExp = feature_annotation_scExp(scExp)
    head(SummarizedExperiment::rowRanges(scExp))

    # Mouse
    scExp = create_scExp(create_scDataset_raw(ref="mm10")$mat,
      create_scDataset_raw(ref="mm10")$annot)
    scExp = feature_annotation_scExp(scExp,ref="mm10")
    head(SummarizedExperiment::rowRanges(scExp))

[Package ChromSCape version 1.2.62 Index]