results_enrichmentTest {ChromSCape} | R Documentation

## Resutls of hypergeometric gene set enrichment test

### Description

Run hypergeometric enrichment test and combine significant pathways into a data.frame

### Usage

    results_enrichmentTest(
      differentialGenes,
      enrichment_qval,
      GeneSets,
      GeneSetsDf,
      GenePool
    )

### Arguments

`differentialGenes` | Genes significantly over / under expressed
`enrichment_qval` | Adusted p-value threshold above which a pathway is considered significative
`GeneSets` | List of pathways
`GeneSetsDf` | Data.frame of pathways
`GenePool` | Pool of possible genes for testing

### Value

A data.frame with pathways passing q.value threshold

[Package ChromSCape version 1.2.62 Index]