table_enriched_genes_scExp {ChromSCape} | R Documentation

## Creates table of enriched genes sets

### Description

Creates table of enriched genes sets

### Usage

    table_enriched_genes_scExp(
      scExp,
      set = "Both",
      group = "C1",
      enr_class_sel = c("c1_positional", "c2_curated", "c3_motif", "c4_computational",
        "c5_GO", "c6_oncogenic", "c7_immunologic", "hallmark")
    )

### Arguments

`scExp` | A SingleCellExperiment object containing list of enriched gene sets.
`set` | A character vector, either 'Both', 'Overexpressed' or 'Underexpressed'. ('Both')
`group` | The "group" name from differential analysis. Can be the cluster name or the custom name in case of a custom differential analysis.
`enr_class_sel` | Which classes of gene sets to show. (c('c1_positional', 'c2_curated', ...))

### Value

A DT::data.table of enriched gene sets.

### Examples

    data("scExp")
    ## Not run: table_enriched_genes_scExp(scExp)

[Package ChromSCape version 1.2.62 Index]