warning_filter_correlated_cell_scExp {ChromSCape} | R Documentation

## warning_filter_correlated_cell_scExp

### Description

warning_filter_correlated_cell_scExp

### Usage

    warning_filter_correlated_cell_scExp(
      scExp,
      random_iter,
      corr_threshold,
      percent_correlation,
      run_tsne,
      downsample,
      verbose
    )

### Arguments

`scExp` | A SingleCellExperiment object containing 'Cor', a correlation matrix, in reducedDims.
`random_iter` | Number of random matrices to create to calculate random correlation scores. (50)
`corr_threshold` | Quantile of random correlation score above which a cell is considered to be 'correlated' with another cell. (99)
`percent_correlation` | Percentage of the cells that any cell must be 'correlated' to in order to not be filtered. (1)
`run_tsne` | Re-run tsne ? (FALSE)
`downsample` | Number of cells to calculate correlation filtering threshold ? (2500)
`verbose` | (TRUE)

### Value

Warnings or Errors if the input are not correct

[Package ChromSCape version 1.2.62 Index]