plot_inter_correlation_scExp {ChromSCape} | R Documentation

## Violin plot of inter-correlation distribution between one or multiple groups and one reference group

### Description

Violin plot of inter-correlation distribution between one or multiple groups and one reference group

### Usage

    plot_inter_correlation_scExp(
      scExp_cf,
      by = c("sample_id", "cell_cluster")[1],
      jitter_by = NULL,
      reference_group = unique(scExp_cf[[by]])[1],
      other_groups = unique(scExp_cf[[by]]),
      downsample = 5000
    )

### Arguments

`scExp_cf` | A SingleCellExperiment
`by` | Color by sample_id or cell_cluster
`jitter_by` | Add jitter points of another layer (cell_cluster or sample_id)
`reference_group` | Character containing the reference group name to calculate correlation from.
`other_groups` | Character vector of the other groups for which to calculate correlation with the reference group.
`downsample` | Downsample for plotting

### Value

A violin plot of inter-correlation

### Examples

    data(scExp)
    plot_intra_correlation_scExp(scExp)

[Package ChromSCape version 1.2.62 Index]