preprocess_TFIDF {ChromSCape} | R Documentation

## Preprocess scExp - TF-IDF

### Description

Preprocess scExp - TF-IDF

### Usage

    preprocess_TFIDF(scExp, scale = 10000, log = TRUE)

### Arguments

`scExp` | A SingleCellExperiment Object
`scale` | A numeric to multiply the matrix in order to have human readeable numbers. Has no impact on the downstream analysis
`log` | Wether to use neperian log on the TF-IDF normalized data or not.

### Value

A SingleCellExperiment object.

### Examples

    scExp = create_scExp(create_scDataset_raw()$mat,create_scDataset_raw()$annot)
    scExp = preprocess_TFIDF(scExp)
    head(SingleCellExperiment::normcounts(scExp))

[Package ChromSCape version 1.2.62 Index]