choose_perplexity {ChromSCape} | R Documentation

## Choose perplexity depending on number of cells for Tsne

### Description

Choose perplexity depending on number of cells for Tsne

### Usage

    choose_perplexity(dataset)

### Arguments

`dataset` | A matrix of features x cells (rows x columns)

### Value

A number between 5 and 30 to use in Rtsne function

[Package ChromSCape version 1.2.62 Index]