plot_heatmap_scExp {ChromSCape} | R Documentation

## Plot cell correlation heatmap with annotations

### Description

Plot cell correlation heatmap with annotations

### Usage

    plot_heatmap_scExp(
      scExp,
      name_hc = "hc_cor",
      corColors = (grDevices::colorRampPalette(c("royalblue", "white", "indianred1")))(256),
      color_by = NULL,
      downsample = 1000,
      hc_linkage = "ward.D"
    )

### Arguments

`scExp` | A SingleCellExperiment Object
`name_hc` | Name of the hclust contained in the SingleCellExperiment object
`corColors` | A palette of colors for the heatmap
`color_by` | Which features to add as additional bands on top of plot
`downsample` | Number of cells to downsample
`hc_linkage` | A linkage method for hierarchical clustering. See cor. ('ward.D')

### Value

A heatmap of cell to cell correlation, grouping cells by hierarchical clustering.

### Examples

    data("scExp")
    plot_heatmap_scExp(scExp)

[Package ChromSCape version 1.2.62 Index]