rawfile_ToBigWig {ChromSCape} | R Documentation

## rawfile_ToBigWig : reads in BAM file and write out BigWig coverage file, normalized and smoothed

### Description

rawfile_ToBigWig : reads in BAM file and write out BigWig coverage file, normalized and smoothed

### Usage

    rawfile_ToBigWig(
      filename,
      BigWig_filename,
      format = "BAM",
      bin_width = 150,
      n_smoothBin = 5,
      ref = "hg38",
      read_size = 101
    )

### Arguments

`filename` | Path to the BAM file (with index) or BED file
`BigWig_filename` | Path to write the output BigWig file
`format` | File format, either "BAM" or "BED"
`bin_width` | Bin size for coverage
`n_smoothBin` | Number of bins for smoothing values
`ref` | Reference genome.
`read_size` | Length of the reads.

### Value

Writes a BigWig file as output

[Package ChromSCape version 1.2.62 Index]