warning_raw_counts_to_sparse_matrix {ChromSCape} | R Documentation

## Warning for raw_counts_to_sparse_matrix

### Description

Warning for raw_counts_to_sparse_matrix

### Usage

    warning_raw_counts_to_sparse_matrix(
      files_dir_list,
      file_type = c("scBAM", "scBED", "SparseMatrix"),
      peak_file = NULL,
      n_bins = NULL,
      bin_width = NULL,
      genebody = NULL,
      extendPromoter = 2500,
      verbose = TRUE,
      ref = "hg38"
    )

### Arguments

`files_dir_list` | A named character vector of directory containing the raw files
`file_type` | Input file(s) type(s) ('scBED','scBAM','SparseMatrix')
`peak_file` | A file containing genomic location of peaks (NULL)
`n_bins` | The number of bins to tile the genome (NULL)
`bin_width` | The size of bins to tile the genome (NULL)
`genebody` | Count on genes (body + promoter) ? (NULL)
`extendPromoter` | If counting on genes, number of base pairs to extend up or downstream of TSS (2500).
`verbose` | Verbose (TRUE)
`ref` | reference genome to use (hg38)

### Value

Error or warnings if the input are not correct

[Package ChromSCape version 1.2.62 Index]