index_peaks_barcodes_to_matrix_indexes {ChromSCape} | R Documentation

## Read index-peaks-barcodes trio files on interval to create count indexes

### Description

Read index-peaks-barcodes trio files on interval to create count indexes

### Usage

    index_peaks_barcodes_to_matrix_indexes(
      feature_file,
      matrix_file,
      barcode_file,
      binarize = FALSE
    )

### Arguments

`feature_file` | A file containing the features genomic locations
`matrix_file` | A file containing the indexes of non-zeroes values and their value (respectively i,j,x,see sparseMatrix)
`barcode_file` | A file containing the barcode ids
`binarize` | Binarize matrix ?

### Value

A list containing a "feature index" data.frame, name_cells, and a region GenomicRange object used to form the sparse matrix

[Package ChromSCape version 1.2.62 Index]