inter_correlation_scExp {ChromSCape} | R Documentation

## Calculate inter correlation between cluster or samples

### Description

Calculate inter correlation between cluster or samples

### Usage

    inter_correlation_scExp(
      scExp_cf,
      by = c("sample_id", "cell_cluster")[1],
      reference_group = unique(scExp_cf[[by]])[1],
      other_groups = unique(scExp_cf[[by]])
    )

### Arguments

`scExp_cf` | A SingleCellExperiment
`by` | On which feature to calculate correlation ("sample_id" or "cell_cluster")
`reference_group` | Reference group to calculate correlation with. Must be in accordance with "by".
`other_groups` | Groups on which to calculate correlation (can contain multiple groups, and also reference_group). Must be in accordance with "by".

### Value

A data.frame of average inter-correlation of cells in other_groups with cells in reference_group

### Examples

    data(scExp)
    inter_correlation_scExp(scExp)

[Package ChromSCape version 1.2.62 Index]