filter_genes_with_refined_peak_annotation {ChromSCape} | R Documentation

## Filter genes based on peak calling refined annotation

### Description

Filter genes based on peak calling refined annotation

### Usage

    filter_genes_with_refined_peak_annotation(
      refined_annotation,
      peak_distance,
      signific,
      over,
      under
    )

### Arguments

`refined_annotation` | A data.frame containing each gene distance to real peak
`peak_distance` | Minimum distance to an existing peak to accept a given gene
`signific` | Indexes of all significantly differential genes
`over` | Indexes of all significantly overexpressed genes
`under` | Indexes of all significantly underexpressed genes

### Value

List of significantly differential, overexpressed and underexpressed genes close enough to existing peaks

[Package ChromSCape version 1.2.62 Index]