warning_plot_reduced_dim_scExp {ChromSCape} | R Documentation

## A warning helper for plot_reduced_dim_scExp

### Description

A warning helper for plot_reduced_dim_scExp

### Usage

    warning_plot_reduced_dim_scExp(
      scExp,
      color_by,
      reduced_dim,
      downsample,
      transparency,
      size,
      max_distanceToTSS,
      annotate_clusters,
      min_quantile,
      max_quantile
    )

### Arguments

`scExp` | A SingleCellExperiment Object
`color_by` | Feature used for coloration
`reduced_dim` | Reduced Dimension used for plotting
`downsample` | Number of cells to downsample
`transparency` | Alpha parameter, between 0 and 1
`size` | Size of the points.
`max_distanceToTSS` | Numeric. Maximum distance to a gene's TSS to consider a region linked to a gene.
`annotate_clusters` | A logical indicating if clusters should be labelled. The 'cell_cluster' column should be present in metadata.
`min_quantile` | The lower threshold to remove outlier cells, as quantile of cell embeddings (between 0 and 0.5).
`max_quantile` | The upper threshold to remove outlier cells, as quantile of cell embeddings (between 0.5 and 1).

### Value

Warning or errors if the inputs are not correct

[Package ChromSCape version 1.2.62 Index]