get_cyto_features {ChromSCape} | R Documentation

## Map features onto cytobands

### Description

Map the features of a SingleCellExperiment onto the cytobands of a given genome. Some features might not be mapped to any cytobands (e.g. if they are not in the canconical chromosomes), and are removed from the returned object.

### Usage

    get_cyto_features(scExp, ref_genome = c("hg38", "mm10")[1])

### Arguments

`scExp` | A SingleCellExperiment with genomic coordinate as features (peaks or bins)
`ref_genome` | Reference genome ('hg38' or 'mm10')

### Details

The cytobands are an arbitrary cutting of the genome that dates back to staining metaphase chromosomes with Giemsa.

### Value

A data.frame of the SCE features with their corresponding cytoband name

### Examples

    data("scExp")
    matching_cyto = get_cyto_features(scExp, ref_genome="hg38")

[Package ChromSCape version 1.2.62 Index]