run_pairwise_tests {ChromSCape} | R Documentation

## Run pairwise tests

### Description

Run pairwise tests

### Usage

    run_pairwise_tests(
      affectation,
      nclust,
      counts,
      feature,
      method,
      progress = NULL,
      BPPARAM = BiocParallel::bpparam()
    )

### Arguments

`affectation` | An annotation data.frame with cell_cluster and cell_id columins
`nclust` | Number of clusters
`counts` | Count matrix
`feature` | Feature data.frame
`method` | DA method, Wilcoxon or edgeR
`progress` | A shiny Progress instance to display progress bar.
`BPPARAM` | BPPARAM object for multiprocessing. See bpparam for more informations. Will take the default BPPARAM set in your R session.

### Value

A list containing objects for DA function

[Package ChromSCape version 1.2.62 Index]