cdUnitTest {Chicago} | R Documentation

## ChicagoData object for unit testing

### Description

This data set is used for unit testing - it is too small to run all of the steps of CHiCAGO. For a toy data set that is large enough, please see the data package. (Note that cdUnitTest is a subset of those data.)

### Usage

    data("cdUnitTest")

### Details

The data are derived from mouse ESCs. They are a subset of the object `smESC` (from the `PCHiCdata` package)

### Value

A `chicagoData` object.

### Source

Schoenfelder, S. et al. "The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements." Genome research 25.4 (2015): 582-597.

### See Also

`smESC`, `chicagoData`

### Examples

    data(cdUnitTest)

    ##modifications to cdUnitTest, ensuring it uses correct design directory
    designDir <- file.path(system.file("extdata", package="Chicago"), "unitTestDesign")
    cdUnitTest <- modifySettings(cd=cdUnitTest, designDir=designDir)

    print(cdUnitTest)

[Package Chicago version 1.20.0 Index]