lociWidth<- {ChIPanalyser} | R Documentation

## Setter Method for the `lociWidth` slot in a `parameterOptions` object

### Description

Setter Method for the `lociWidth` slot in a `parameterOptions` object

### Usage

    lociWidth(object)<-value

### Arguments

`object` | `object` is `parameterOptions` object
`value` | `value` is the numeric value to be assigned to the lociWidth slot. Default set at 1.

### Details

When using the `processingChIP` function, the provided ChIP scores will be split into bins of a given size. lociWidth determines the Size of that bin. Default is set at 20 000 bp. This mean that the ChIP profiles provided will be split into bins of 20 000 bp over the entire profile provided if no loci of interest is provided.

### Value

Returns the value assigned to the `lociWidth` slot in a `parameterOptions` object.

### Author(s)

Patrick C. N. Martin <p.martin@essex.ac.uk>

### References

Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.

### Examples

    # Loading data
    data(ChIPanalyserData)

    #Building data objects
    GPP <- parameterOptions(lociWidth=20000)
    #Setting new Value for lociWidth
    lociWidth(GPP) <- 30000

[Package ChIPanalyser version 1.14.0 Index]