ChIPSeqSpikeDatasetListBoost-class {ChIPSeqSpike} | R Documentation

## ChIPSeqSpikeDatasetListBoost Reference Class

### Description

Class containing a list of ChIPSeqSpikeDatasetBoost objects

### Fields

datasetList: A list of ChIPSeqSpikeDatasetBoost objects

### Constructor

ChIPSeqSpikeDatasetListBoost(dataset_list, verbose)

### Arguments

dataset_list

  A properly formatted list of information needed to create the object (see details).

verbose

  Indicate if processing messages should be output.

### Getters

`exportBigWigs`

  Output all bigwig files corresponding to the previously performed transformations. The list of bigwig files is given in info.csv (see details).

`x[[i]]`

  Get the ChIPSeqSpikeDatasetBoost object at index i

### Details

This class enables to process datasets containing different input files in boost mode. It will creates a list of ChIPSeqSpikeDatasetBoost objects, each of them containing a different input.

The above indicated constructor should not be used directly. One would rather create the object by calling the "meta-constructor" spikeDataset function, which takes a info.csv file as input, setting boost = TRUE. spikeDataset function formats properly the different information into a dataset_list which is submitted to the ChIPSeqSpikeDatasetListBoost constructor.

### Author(s)

Nicolas Descostes

### See Also

`ChIPSeqSpikeDatasetBoost-class` `spikeDataset` `spikeSummary` `getRatio`

### Examples

    info_file_csv <- system.file("extdata/info.csv", package="ChIPSeqSpike")
    bam_path <- system.file(c("extdata/bam_files"), package="ChIPSeqSpike")
    bigwig_path <- system.file(c("extdata/bigwig_files"), package="ChIPSeqSpike")

    if(.Platform$OS.type != 'windows') {
        csds <- spikeDataset(infoFile = info_file_csv, bamPath = bam_path,
                             bigWigPath = bigwig_path, boost = TRUE)
        is(csds)
        csds
    }

[Package ChIPSeqSpike version 1.12.0 Index]