plotPeakProfile-methods {ChIPQC} | R Documentation

## Generate peak profile plots

### Description

Generate peak profile plots.

### Methods

`signature(object = "ChIPQCexperiment", method)`

  Generate peak profile plots for all the samples in an experiment.

`signature(object = "list", method)`

  Generate peak profile plots for all the samples in a list of ChIPQCsample objects..

`signature(object = "ChIPQCsample", method)`

  Generate peak profile plots for a sample.

### Note

plotPeakProfile uses `ggplot2` for plotting, and returns a `ggplot2` plot dataframe.

### Author(s)

Thomas Carroll and Rory Stark

### See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

### Examples

    data(example_QCexperiment)
    plotCoverageHist(exampleExp,facetBy=c("Tissue","Factor"))
    plotCoverageHist(QCsample(exampleExp,1))
    data(tamoxifen_QC)
    plotCoverageHist(tamoxifen,facetBy=c("Tissue","Condition"))

[Package ChIPQC version 1.28.0 Index]