ribl-methods {ChIPQC} | R Documentation

## Retrieve numbers of reads overlapping blacklisted regions

### Description

Retrieve the numbers of reads overlapping blacklisted regions.

### Methods

`signature(object = "ChIPQCexperiment")`

  Retrieve a `vector` of the numbers of reads overlapping blacklisted regions for each sample in an experiment.

`signature(object = "list")`

  Retrieve a `vector` of the numbers of reads overlapping blacklisted regions for each sample in a list of ChIPQCsample objects.

`signature(object = "ChIPQCsample")`

  Retrieve the number of reads overlapping blacklisted regions in a sample.

### Author(s)

Thomas Carroll and Rory Stark

### See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

### Examples

    data(example_QCexperiment)
    ribl(exampleExp)
    ribl(QCsample(exampleExp,1))

[Package ChIPQC version 1.28.0 Index]