plotCC-methods {ChIPQC} | R Documentation

## Generate Cross-Coverage plots

### Description

Generate Cross-Coverage plots.

### Methods

`signature(object = "ChIPQCexperiment", method)`

  Generate cross-coverage plots for all the samples in an experiment.

`signature(object = "list", method)`

  Generate cross-coverage plots for list of samples in an experiment.

`signature(object = "ChIPQCsample", methods)`

  Generate cross-coverage plots for a sample. Supported methods include:

  "Coverage" [default] | Coverage plot

### Note

plotCC uses `ggplot2` for plotting, and returns a `ggplot2` plot dataframe.

### Author(s)

Thomas Carroll and Rory Stark

### See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

### Examples

    data(example_QCexperiment)
    plotCC(exampleExp)
    plotCC(exampleExp,excludedBox=TRUE)
    plotCC(QCsample(exampleExp,1))
    plotCC(QCsample(exampleExp)[1:4])

[Package ChIPQC version 1.28.0 Index]