.embedSamples_def {CellTrails} | R Documentation

## DEF: Spectral embedding of samples

### Description

For details see `embedSamples`

### Usage

    .embedSamples_def(x, nbins = 10, sigma = 0.75, design = NULL)

### Arguments

`x` | A numerical matrix
`nbins` | Cubic B-spline discretization is used to compute fuzzy mutual information between pairs of samples; `nbins` defines the number of intervals used for discretization of expression data. (default: 10)
`sigma` | The mutual information matrix is transformed to an adjacency matrix using a heat kernel; `sigma` defines the radius of heat kernel (in quantiles; default: `sigma` = 0.75 which is the third quantile of the mutual information matrix).
`design` | A numeric matrix describing the factors that should be blocked

### Author(s)

Daniel C. Ellwanger

[Package CellTrails version 1.10.0 Index]