Package: COHCAP
Type: Package
Title: CpG Island Analysis Pipeline for Illumina Methylation Array and
        Targeted BS-Seq Data
Version: 1.38.0
Date: 2020-04-29
Author: Charles Warden <cwarden@coh.org>, Yate-Ching Yuan <yyuan@coh.org>, Xiwei Wu <xwu@coh.org>
Maintainer: Charles Warden <cwarden@coh.org>
Depends: WriteXLS, COHCAPanno, RColorBrewer, gplots
Imports: Rcpp, RcppArmadillo, BH
LinkingTo: Rcpp, BH
Description: COHCAP (pronounced "co-cap") provides a pipeline to analyze
        single-nucleotide resolution methylation data (Illumina 450k/EPIC
        methylation array, targeted BS-Seq, etc.). It provides differential
		methylation for CpG Sites, differential methylation for CpG Islands,
		integration with gene expression data, with visualizaton options.
		Discussion Group: https://sourceforge.net/p/cohcap/discussion/bioconductor/
License: GPL-3
SystemRequirements: Perl
LazyLoad: yes
biocViews: DNAMethylation, Microarray, MethylSeq, Epigenetics,
        DifferentialMethylation
git_url: https://git.bioconductor.org/packages/COHCAP
git_branch: RELEASE_3_13
git_last_commit: 706e19c
git_last_commit_date: 2021-05-19
Date/Publication: 2021-05-19
NeedsCompilation: yes
Packaged: 2021-05-19 23:30:43 UTC; biocbuild
Built: R 4.1.0; i386-w64-mingw32; 2021-05-20 07:38:02 UTC; windows
Archs: i386, x64
