identifyPolymorphicRegion {CNVrd2} | R Documentation

## Identity polymorphic regions.

### Description

Using quantile values to identify polymorphic regions.

### Usage

    identifyPolymorphicRegion(Object, ...)

### Arguments

`Object` | An object of class CNVrd2
`...` | `polymorphicRegionObject`An object obtained from the process of identifying poplymorphic regions. Optional arguments.

### Value

`putativeBoundary` | resultant boundaries based on quantile thresholds.
`subRegionMatrix` | segmentation-score matrix of sub-regions derived from the segmentation process.
`subRegion` | sub-regions derived from the segmentation process.
`mQuantile` | matrix of quantile values.
`mSD` | data frame including subregions and their standard deviations.
`Vst` | data frame of Vst between populations if VstTest = TRUE.
`SSofPolymorphicRegions` | segmentation scores of polymorphic regions.

### Note

Users can choose various quantile values and adjust different thresholds to obtain polymorphic regions.

To visualize more clearly polymorphic regions user can use the method plotPolymorphicRegion with the option typePlot="SD".

### Author(s)

Hoang Tan Nguyen, Tony R Merriman and MA Black. hoangtannguyenvn@gmail.com

### See Also

`plotPolymorphicRegion`

### Examples

    ## Not run:

    fcgr3PolymorphicRegion <- identifyPolymorphicRegion(Object = objectCNVrd2,
                                                        segmentObject = resultSegment,
                                                        thresholdForPolymorphicRegions = c(0.75, 0.25),
                                                        plotLegend = FALSE)

    ## End(Not run)

[Package CNVrd2 version 1.30.0 Index]