plotPeaks {CNAnorm} | R Documentation

## Methods for Function plotPeaks in Package ‘CNAnorm’

### Description

`plotPeaks` plot annotated distribution of ratio Test/Normal

### Usage

    ## S4 method for signature 'CNAnorm'
    plotPeaks(object, special1 = character(0), special2 = character(0),
        show ='suggested', ...)

### Arguments

`object` | An object of Class `"CNAnorm"`
`special1` | The chromosome/contig whose distribution will be shown with a different color
`special2` | The chromosome/contig whose distribution will be shown with a different color
`show` | A character verctor with one or both of the following: `"suggested"`, `"validated"`. Specify what need to be plotted
`...` | Further arguments to pass to the function `plot`

### Author(s)

Stefano Berri s.berri@leeds.ac.uk

### See Also

`plot`, `validation`, `peakPloidy`

### Examples

    data(CN)
    # see peakPloidy documentation to know how object CN is created
    plotPeaks(CN, special1 = 'chrX', special2 = 'chrY')

[Package CNAnorm version 1.38.0 Index]