82c00b01afab8cc7247470e55d2775e7 *CITATION
6cf939ab66b47c59775b30335e4703b5 *DESCRIPTION
7cba324e068e87cb387ecfb23ef44ab7 *INDEX
3abe4b742d9ccb01359cabb2dc1f70c0 *Meta/Rd.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
ad8164802136e2cf8cd4df494cc2c31e *Meta/hsearch.rds
6d04d7c4ecf412306792b50ece4deabb *Meta/links.rds
79c083ca354d8a8a063c8ac6a0b41918 *Meta/nsInfo.rds
8c5e664598e1dd963b7e825f8de7a88b *Meta/package.rds
e8e26fba60c297b61f431ca3a656b627 *Meta/vignette.rds
aff5d3095281b8696bb8f8dbee94bf4e *NAMESPACE
571d6af29b43b04ce35483899ec9b0ca *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/CHRONOS
c8fe49661f68597eb11bc7e166852052 *R/CHRONOS.rdb
c88305b593ef768ee740aa32fc7e0941 *R/CHRONOS.rdx
5060cd035b4e479ec4b608a1cf513f95 *doc/CHRONOS.R
7cbdd0127ad5f77a0ee7c6ee3b48063a *doc/CHRONOS.Rmd
d44b9b19b88c95f1cb7e08f5868d7974 *doc/CHRONOS.pdf
f9260aa5f28bca1bcb77cbf2f18f4926 *doc/index.html
8d1c8068f1e84c53b28cbe095f4801f5 *extdata/Downloads/KEGG/hsa/hsa04915.xml
40ef2ba0fbdc3b2a3a78eddadb990099 *extdata/Downloads/KEGG/hsa/hsa04917.xml
bd05b84234ad3f33ae6ea7516c7f4f97 *extdata/Downloads/KEGG/hsa/hsa04930.xml
263f5c1323dd479aa9781f0455f831ca *extdata/Downloads/KEGG/hsa/hsa05031.xml
5c86930303076b56fffb2124659ee722 *extdata/Downloads/mirbase/miRNAmaps_cel.RData
a0cb7ea78b15e55988d9ac247456bcbe *extdata/Downloads/mirbase/miRNAmaps_cfa.RData
20656607818c5a6e0f0999336c998947 *extdata/Downloads/mirbase/miRNAmaps_dme.RData
6ac71ed83a95d7c3be06257ba71cfe4c *extdata/Downloads/mirbase/miRNAmaps_dre.RData
d801f193d9043e618fc4db0cd5a12bab *extdata/Downloads/mirbase/miRNAmaps_gga.RData
848308837e8a4b8c8c9dda5b2b3b0338 *extdata/Downloads/mirbase/miRNAmaps_hsa.RData
f26276ab1d447631f168ed71619f0300 *extdata/Downloads/mirbase/miRNAmaps_mmu.RData
d886c18f5539936ff080e8a078f91513 *extdata/Downloads/mirbase/miRNAmaps_oar.RData
61f80721ee625b915c5e278e32f1878d *extdata/Downloads/mirbase/miRNAmaps_rno.RData
ba0338a0619071b90c76159b19b7dda0 *extdata/Examples/data.RData
8d1c8068f1e84c53b28cbe095f4801f5 *extdata/Examples/kgml/hsa04915.xml
40ef2ba0fbdc3b2a3a78eddadb990099 *extdata/Examples/kgml/hsa04917.xml
bd05b84234ad3f33ae6ea7516c7f4f97 *extdata/Examples/kgml/hsa04930.xml
263f5c1323dd479aa9781f0455f831ca *extdata/Examples/kgml/hsa05031.xml
80be6b7034da70420088ae883e122025 *extdata/User/TarBase.xlsx
b73847dc20f74e19d50f266e54a900a9 *extdata/User/interestingGenes.txt
f5bd80c56bd4310f22a950f561b4db72 *extdata/User/mRNAexpressions.txt
6209f09eb733f87ac17256483bfcef3a *extdata/User/miRNAexpressions.txt
6da5e89fa7bb7b55bef94a3f3fbeb067 *extdata/User/miRecords.xlsx
67b9999ac058bfbe67206f9d90700dbe *help/AnIndex
601afe78e917783647eda24157d5453b *help/CHRONOS.rdb
fd8b2bd567e805ebbc6886dbd4f22a94 *help/CHRONOS.rdx
ef11dc0a6fe3951d5bb86df662048336 *help/CHRONOSrun.html
be41b22fa109e1e853eda185e718b815 *help/aliases.rds
aeafda256f434bad3422c4e7885edb50 *help/convertMiRNANomenclature.html
70eb7e45e3e084df92558cd0c725523e *help/convertNomenclature.html
7748b18a2e74e2187069a4e92d27d105 *help/createPathwayGraphs.html
8497b191f7978d3a6af4113b381e810a *help/downloadKEGGPathwayList.html
fbe1d280c16419c5f22dbe5965378172 *help/downloadMiRecords.html
a316df19db3a794c4faa3c2f6040b910 *help/downloadPathways.html
2a5eda1bd7df28da4624eb6d61e45c5d *help/extractLinearSubpathways.html
05eabbf2cd7d3ff6771b844efadd88cf *help/extractNonLinearSubpathways.html
a1a8f825360e057943f4af72763a9f18 *help/getEdgeTypes.html
0f262530b820dba8a63cadaef7e0f795 *help/importExpressions.html
3d60da29802f32e1d2218aa770ae4482 *help/paths.rds
b1ffc43b72994360059d99ccc7365f9c *help/pathwayMeasures.html
bcc3181f7e02688eb54320b4560d52d2 *help/scoreSubpathways.html
9b373feb1b21f3f26f2780454d9206df *help/subpathwayKEGGmap.html
01beec8d351313480e667407d0743468 *help/subpathwayMiRNAs.html
a4d982b23f2a193dd1b0267611e2bf0a *help/visualizeResults.html
a37f94a1a4584c6cda70d727d1d2bc62 *html/00Index.html
81405fad365cb630229745a4f76ca068 *html/CHRONOSrun.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
3e7294fc44fc8324a00d65006f024e18 *html/convertMiRNANomenclature.html
44c7f2c8ec2066251200f8a9e9081fbb *html/convertNomenclature.html
62479c3202da8af97a8cc28cc0ac3a69 *html/createPathwayGraphs.html
a13d2a8a32259dda318f3749da5f3c42 *html/downloadKEGGPathwayList.html
1afa5f6bcb82b9a8db1c14dd6b040272 *html/downloadMiRecords.html
eb30103405d1ba0dfcad2a11a57ed637 *html/downloadPathways.html
3a113287a8c910c91f6737a33aae6acd *html/extractLinearSubpathways.html
a56d5efbe530e30ef0311b310667f92f *html/extractNonLinearSubpathways.html
20bdc8375d9763d5572a8e4599268541 *html/getEdgeTypes.html
e052589d9563df2e6ffe3bccf5e8dafe *html/importExpressions.html
c25139d8362e03b67c1ed870dfa1ee94 *html/pathwayMeasures.html
1778c0980b58c7b18ab105441c883291 *html/scoreSubpathways.html
bc0dbf38c84f47b40a3e604e9d16ba3a *html/subpathwayKEGGmap.html
0c3811d544f0bf2e1da4c4738828df58 *html/subpathwayMiRNAs.html
4594570eb4034b8b4e9a1bea6a4c365a *html/visualizeResults.html
5b871fbb3592af29b328450307e42a72 *java/CHRONOS.jar
f26364f968916f546b7b86cf122f27c3 *unitTests/test_CHRONOSrun.R
4f7aefd3040ac2c26db999d47096f53d *unitTests/test_pathwayToGraph.R
3d1e948699f5b4b9d0c25fa99afce3c6 *unitTests/test_subExtractionLinear.R
b5a2804bef03d6cca7315e983cd6852d *unitTests/test_subExtractionNonLinear.R
8c9ceaeb0876827e50e9468aadb3f67b *unitTests/test_subRefinement.R
3100a07ec828065bfc818a701ef293e3 *unitTests/test_subVisualization.R
