plot_gsea {CEMiTool} | R Documentation

## GSEA visualization

### Description

Creates a heatmap with the results of gene set enrichment analysis (GSEA) of co-expression modules

### Usage

    plot_gsea(cem, ...)

    ## S4 method for signature 'CEMiTool'
    plot_gsea(cem, pv_cut = 0.05)

### Arguments

`cem` | Object of class `CEMiTool`.
`...` | Optional parameters.
`pv_cut` | P-value cut-off. Default `0.05`

### Value

Object of class `CEMiTool` with GSEA plots

### Examples

    # Get example CEMiTool object
    data(cem)
    # Get example sample annotation file
    # Run GSEA on network modules
    cem <- mod_gsea(cem)
    # Plot GSEA results
    cem <- plot_gsea(cem)
    # Check resulting plot
    show_plot(cem, "gsea")

[Package CEMiTool version 1.16.0 Index]