get_connectivity {CEMiTool} | R Documentation

## Calculate network connectivity

### Description

This function takes a CEMiTool object and returns the network connectivity.

### Usage

    get_connectivity(cem, ...)

    ## S4 method for signature 'CEMiTool'
    get_connectivity(cem, beta)

### Arguments

`cem` | Object of class `CEMiTool` containing the fit_indices slot
`...` | Optional parameters.
`beta` | A soft-thresholding value to be used for the network.

### Value

The value of the network's connectivity.

### Examples

    # Get example expression data
    data(expr0)
    # Initialize new CEMiTool object with expression data
    cem <- new_cem(expr0, filter=TRUE, apply_vst=FALSE)
    # Get modules and beta data
    cem <- find_modules(cem)
    # Get network connectivity with example beta value 8
    get_connectivity(cem, beta=8)

[Package CEMiTool version 1.16.0 Index]