CTSSclusteringMethod {CAGEr} | R Documentation

## Get /set CTSS clustering method

### Description

Returns or sets the name of the method that was used make tag clusters from the CTSSs of a `CAGEr` object.

### Usage

    CTSSclusteringMethod(object)

    ## S4 method for signature 'CAGEset'
    CTSSclusteringMethod(object)

    ## S4 method for signature 'GRangesList'
    CTSSclusteringMethod(object)

    ## S4 method for signature 'CAGEexp'
    CTSSclusteringMethod(object)

    CTSSclusteringMethod(object) <- value

    ## S4 replacement method for signature 'CAGEset'
    CTSSclusteringMethod(object) <- value

    ## S4 replacement method for signature 'GRangesList'
    CTSSclusteringMethod(object) <- value

    ## S4 replacement method for signature 'CAGEexp'
    CTSSclusteringMethod(object) <- value

### Arguments

`object` | A CAGEr object.
`value` | character

### Author(s)

Vanja Haberle

Charles Plessy

### See Also

`clusterCTSS`

Other CAGEr accessor methods: `CTSScoordinates`, `CTSScumulativesTagClusters`, `CTSSnormalizedTpm`, `CTSStagCountTable`, `CTSStagCount`, `GeneExpDESeq2`, `GeneExpSE`, `consensusClustersGR`, `genomeName`, `inputFilesType`, `inputFiles`, `librarySizes`, `sampleLabels`, `seqNameTotalsSE`, `tagClusters`

Other CAGEr clusters functions: `CTSScumulativesTagClusters`, `CustomConsensusClusters`, `aggregateTagClusters`, `clusterCTSS`, `consensusClustersDESeq2`, `consensusClustersGR`, `cumulativeCTSSdistribution`, `plotInterquantileWidth`, `quantilePositions`, `tagClusters`

### Examples

    CTSSclusteringMethod(exampleCAGEset)
    CTSSclusteringMethod(exampleCAGEexp)

[Package CAGEr version 1.34.0 Index]