bipg_tests {BiocOncoTK} | R Documentation

## configure a bipartite graph relating tumor type to gene, using graphNEL

### Description

configure a bipartite graph relating tumor type to gene, using graphNEL

### Usage

    bipg_tests(
      stattab,
      genes_adverse = NA,
      genes_favorable = NA,
      gpar_cex = 0.65,
      gpar_lwd = 0
    )

### Arguments

`stattab` | a data.frame with columns 'tumor', 'gene', and 'tstat'
`genes_adverse` | a vector of genes whose increased expression is regarded as adverse
`genes_favorable` | a vector of genes whose increased expression is regarded as favorable
`gpar_cex` | tune size of graph labels
`gpar_lwd` | tune appearance of node boundaries

### Value

a graphNEL instance (graph package)

### Examples

    bipg_tests(k23sig)

[Package BiocOncoTK version 1.12.1 Index]