get_plates {BiocOncoTK} | R Documentation

## use curatedTCGAData request to acquire plate codes for samples

### Description

use curatedTCGAData request to acquire plate codes for samples

### Usage

    get_plates(
      tumcode = "BLCA",
      assay = "RNASeq2GeneNorm",
      samptypes = c("01", "02", "03", "04", "06", "09", "40")
    )

### Arguments

`tumcode` | a TCGA tumor code, usually 3 or for characters
`assay` | a curatedTCGAData assay code, run curatedTCGAData() to see a message with available options
`samptypes` | a character vector with codes as defined at https://gdc.cancer.gov/resources-tcga-users/tcga-code-tables/sample-type-codes

### Value

a data.frame with a row for each TCGA contribution for the selected tumor type and assay type

### Examples

    if (interactive()) {
     plts_blca_rnaseq = get_plates()
     dim(plts_blca_rnaseq)
     head(plts_blca_rnaseq)
    }

[Package BiocOncoTK version 1.12.1 Index]