multiviz {BiocOncoTK} | R Documentation

## visualize aspects of MSIsensor/expression relationships

### Description

visualize aspects of MSIsensor/expression relationships

### Usage

    multiviz(
      tum = "MESO",
      gene = "TYMS",
      intrans = log10pl1(p = 1),
      inmeth = "auto",
      topmsi = Inf,
      indata,
      nvar = 6
    )

### Arguments

`tum` | a TCGA tumor code
`gene` | a gene symbol used in the indata data.frame
`intrans` | an instance of the trans() transformation method of scales package
`inmeth` | a valid setting for method parameter for geom_smooth
`topmsi` | maximum numeric value for x-axis when plotting against MSI value
`indata` | a data.frame instance with values for acronym, gene, msival
`nvar` | numeric() number of variables to show in biplot

[Package BiocOncoTK version 1.12.1 Index]