module_stability {BioNERO} | R Documentation

## Perform module stability analysis

### Description

Perform module stability analysis

### Usage

    module_stability(exp, net, nRuns = 20)

### Arguments

`exp` | A gene expression data frame with genes in row names and samples in column names or a 'SummarizedExperiment' object.
`net` | List object returned by `exp2gcn`.
`nRuns` | Number of times to resample. Default is 20.

### Value

A base plot with the module stability results.

### See Also

`sampledBlockwiseModules`,`matchLabels`,`plotDendroAndColors`

### Examples

    data(filt.se)
    # The SFT fit was previously calculated and the optimal power was 16
    gcn <- exp2gcn(filt.se, SFTpower = 18, cor_method = "pearson")
    # For simplicity, only 2 runs
    module_stability(exp = filt.se, net = gcn, nRuns = 2)

[Package BioNERO version 1.0.4 Index]