plot_dendro_and_cons_colors {BioNERO} | R Documentation

## Plot dendrogram of genes and consensus modules

### Description

Plot dendrogram of genes and consensus modules

### Usage

    plot_dendro_and_cons_colors(consensus)

### Arguments

`consensus` | Consensus network returned by `consensus_modules`.

### Value

A base plot with the gene dendrogram and modules.

### Examples

    set.seed(12)
    data(zma.se)
    filt.zma <- filter_by_variance(zma.se, n=500)
    zma.set1 <- filt.zma[, sample(colnames(filt.zma), size=20, replace=FALSE)]
    zma.set2 <- filt.zma[, sample(colnames(filt.zma), size=20, replace=FALSE)]
    list.sets <- list(zma.set1, zma.set2)
    # SFT power previously identified with consensus_SFT_fit()
    cons_mod <- consensus_modules(list.sets, power = c(11, 13),
                                  cor_method = "pearson")
    plot_dendro_and_cons_colors(cons_mod)

[Package BioNERO version 1.0.4 Index]