parse_orthofinder {BioNERO} | R Documentation

## Parse orthogroups identified by OrthoFinder

### Description

This function converts the orthogroups file named Orthogroups.tsv to a 3-column data frame that can be interpreted by BioNERO.

### Usage

    parse_orthofinder(file_path = NULL)

### Arguments

`file_path` | Path to Orthogroups/Orthogroups.tsv file generated by OrthoFinder.

### Value

A 3-column data frame with orthogroups, species IDs and gene IDs, respectively.

### Author(s)

Fabricio Almeida-Silva

### Examples

    path <- system.file("extdata", "Orthogroups.tsv", package = "BioNERO")
    og <- parse_orthofinder(path)

[Package BioNERO version 1.0.4 Index]