3f068677c133c756fe2423a216d65520 *DESCRIPTION
993f8e85e5afcfc56090ff1f6a9d0eff *INDEX
c0fb5348f96091184c2f2c1ebb51f149 *Meta/Rd.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
55198e3f5c5b9f95e5c6f7c385a37c09 *Meta/hsearch.rds
e98efffd8e00f616b8b982bc79ddcd9e *Meta/links.rds
db247d5d16bfe13ba316c792bc796039 *Meta/nsInfo.rds
5cb271b64dbe948e5a367e45a28d755c *Meta/package.rds
de711644826780a8c430cee2f2e36922 *Meta/vignette.rds
d83d1c012c784b5dd616b4f3116be75a *NAMESPACE
40540de1f70da1bbb72c4fb58b5f3733 *NEWS.Rd
d6c68f1fe41ced6e98a766a3757313da *R/BgeeCall
ff371b31e06e6b4ba8bb5e4cfab6f658 *R/BgeeCall.rdb
9b0450e72dde49f4fa094b5c4a4803a6 *R/BgeeCall.rdx
d1ac4c62434780371f8f6dcb9845cfdb *doc/bgeecall-manual.R
d5240e57d167e763490a20fc95320fe7 *doc/bgeecall-manual.Rmd
92b684ed909c2707155cd3dba1beb9f3 *doc/bgeecall-manual.html
65fc15c466f924f543a70d6eb3b68072 *doc/index.html
5672541e6cb270e1d384b5963b653b2a *extdata/SRX099901_subset/SRR350955_subset.fastq.gz
6fa5ec7100a04a071ac43d9491ddcd81 *extdata/annotation.gtf
973b3e5aa9d6d76c12969d8cdfcac179 *extdata/intergenic_0.1/6239/annotation_WBcel235_84/gene2biotype.tsv
bb94eb38028b302c8fe67df61d99e883 *extdata/intergenic_0.1/6239/annotation_WBcel235_84/tx2gene.tsv
e761ec9e3395b45503eea483e060183a *extdata/intergenic_0.1/all_results/SRX099901_subset/abundance.tsv
924379603da81869e738cdda477003ad *extdata/transcriptome.fa
6ea7ee88b527cb419819a79a5f798021 *help/AbundanceMetadata-class.html
6ea7ee88b527cb419819a79a5f798021 *help/AbundanceMetadata.html
587b3ee9d0259a7adc3ff3c5dfed7af9 *help/AnIndex
050ddb8b3fffcf835fb97f0d7a2c98a2 *help/BgeeCall.html
84f41f1f412021de27161822c7999505 *help/BgeeCall.rdb
005bb53127c26f1225339a3dca8d54a5 *help/BgeeCall.rdx
960c56d69139d2f7184371125ecd69d9 *help/BgeeMetadata-class.html
960c56d69139d2f7184371125ecd69d9 *help/BgeeMetadata.html
65a737c727830317772ac1df7173637a *help/KallistoMetadata-class.html
65a737c727830317772ac1df7173637a *help/KallistoMetadata.html
b88668491d6b95c58b7980750f32393a *help/UserMetadata-class.html
b88668491d6b95c58b7980750f32393a *help/UserMetadata.html
1dde429ecd32b92f834aaf4eacf36f25 *help/aliases.rds
15abe3f3dfac6d9e2848c9d2da148a37 *help/create_kallisto_index.html
67579ac96a483c4996a5281dad83a327 *help/download_fasta_intergenic.html
64efb02be0ab77761ec293b98a9b8b64 *help/download_kallisto.html
66b7fc57d0263cf9d795b845c6cb4ed6 *help/generate_calls_workflow.html
4af5a80d744d77fbff94062f5a286780 *help/generate_presence_absence.html
3f4237ad6c97b5fe85a5528744149e03 *help/generate_slurm_calls.html
cc623582188b31b759edb00f39ef62f6 *help/generate_slurm_indexes.html
9f46e6b7bb4349b913156d5da4c2f038 *help/getIntergenicPrefix,BgeeMetadata-method.html
9f46e6b7bb4349b913156d5da4c2f038 *help/getIntergenicPrefix,bgeeMetadata.html
9f46e6b7bb4349b913156d5da4c2f038 *help/getIntergenicPrefix.html
a04d2aa127e5f6b178d0ddc0b43970cd *help/getIntergenicRelease,BgeeMetadata-method.html
a04d2aa127e5f6b178d0ddc0b43970cd *help/getIntergenicRelease,bgeeMetadata.html
a04d2aa127e5f6b178d0ddc0b43970cd *help/getIntergenicRelease.html
ff003305a89b7670717ba929c65a0396 *help/getRunIds,UserMetadata-method.html
ff003305a89b7670717ba929c65a0396 *help/getRunIds,userMetadata.html
ff003305a89b7670717ba929c65a0396 *help/getRunIds.html
889f0f8f44fc44d92788f85d483dd246 *help/getSimpleArborescence,UserMetadata-method.html
889f0f8f44fc44d92788f85d483dd246 *help/getSimpleArborescence,userMetadata.html
889f0f8f44fc44d92788f85d483dd246 *help/getSimpleArborescence.html
de204a0c09fb67e5a354987cda490652 *help/getWorkingPath,UserMetadata-method.html
de204a0c09fb67e5a354987cda490652 *help/getWorkingPath,userMetadata.html
de204a0c09fb67e5a354987cda490652 *help/getWorkingPath.html
8239bb7398015c6fffd16abccec5d077 *help/get_summary_stats.html
7d58ee7f7ce07e2316735d2efdb6672c *help/list_bgee_ref_intergenic_species.html
4b33b2307909ecb5fc27f843a47dd4e8 *help/list_community_ref_intergenic_species.html
41f3657b73b58dfed42ff60758a2e8f3 *help/list_intergenic_release.html
646d86178c5e16113fba5d62cc6abbc7 *help/merge_transcriptome_and_intergenic.html
fac1b4b10088f301c1a4f4d1fcef82e4 *help/merging_libraries.html
9c757393d629ec17e2a5b391f838ec91 *help/paths.rds
5c2f4e1fc8102920ae0f714cd05db23d *help/run_kallisto.html
9b1dec3f5e7a3222eadbeb121fe95401 *help/run_tximport.html
f7d4629acc4840be3df91103035e71e1 *help/setAnnotationFromFile,UserMetadata,character,character-method.html
f7d4629acc4840be3df91103035e71e1 *help/setAnnotationFromFile,UserMetadata,character,missing-method.html
f7d4629acc4840be3df91103035e71e1 *help/setAnnotationFromFile,userMetadata,character,character.html
f7d4629acc4840be3df91103035e71e1 *help/setAnnotationFromFile.html
5892474c5f594e4e931e038cc0dcc556 *help/setAnnotationFromObject,UserMetadata,GRanges,character-method.html
5892474c5f594e4e931e038cc0dcc556 *help/setAnnotationFromObject,userMetadata,GRanges,character.html
5892474c5f594e4e931e038cc0dcc556 *help/setAnnotationFromObject.html
ec9b41c59abbeb4deaabefbbb2e23a65 *help/setIntergenicRelease,BgeeMetadata,character-method.html
ec9b41c59abbeb4deaabefbbb2e23a65 *help/setIntergenicRelease,bgeeMetadata,character.html
ec9b41c59abbeb4deaabefbbb2e23a65 *help/setIntergenicRelease.html
2774823a3466713f82c0fd42f19ed5fd *help/setOutputDir,UserMetadata,character-method.html
2774823a3466713f82c0fd42f19ed5fd *help/setOutputDir,userMetadata,character.html
2774823a3466713f82c0fd42f19ed5fd *help/setOutputDir.html
451f6d783d3dd6eefa59b4fda21b937d *help/setRNASeqLibPath,UserMetadata,character-method.html
451f6d783d3dd6eefa59b4fda21b937d *help/setRNASeqLibPath,userMetadata,character.html
451f6d783d3dd6eefa59b4fda21b937d *help/setRNASeqLibPath.html
e5f901fa56c1b4c91eada2b64e5e6e3e *help/setRunIds,UserMetadata,character-method.html
e5f901fa56c1b4c91eada2b64e5e6e3e *help/setRunIds,userMetadata,character.html
e5f901fa56c1b4c91eada2b64e5e6e3e *help/setRunIds.html
ee61e411911922ae931b5b99df9ee7a9 *help/setSimpleArborescence,UserMetadata,logical-method.html
ee61e411911922ae931b5b99df9ee7a9 *help/setSimpleArborescence,userMetadata,logical.html
ee61e411911922ae931b5b99df9ee7a9 *help/setSimpleArborescence.html
deda90ef54654befda94b568b3f8ef36 *help/setTranscriptomeFromFile,UserMetadata,character,character-method.html
deda90ef54654befda94b568b3f8ef36 *help/setTranscriptomeFromFile,UserMetadata,character,missing-method.html
deda90ef54654befda94b568b3f8ef36 *help/setTranscriptomeFromFile,userMetadata,character,character.html
deda90ef54654befda94b568b3f8ef36 *help/setTranscriptomeFromFile,userMetadata,character,missing.html
deda90ef54654befda94b568b3f8ef36 *help/setTranscriptomeFromFile.html
522dc32f8f560c9d1846a1c9e1fffabb *help/setTranscriptomeFromObject,UserMetadata,DNAStringSet,character-method.html
522dc32f8f560c9d1846a1c9e1fffabb *help/setTranscriptomeFromObject,userMetadata,DNAStringSet,character.html
522dc32f8f560c9d1846a1c9e1fffabb *help/setTranscriptomeFromObject.html
c2cd47150d5270b34c96769c1e33b0a2 *help/setWorkingPath,UserMetadata,character-method.html
c2cd47150d5270b34c96769c1e33b0a2 *help/setWorkingPath,userMetadata,character.html
c2cd47150d5270b34c96769c1e33b0a2 *help/setWorkingPath.html
179f8529edf83b8d2436f09c9f5626ec *html/00Index.html
0732254bab25a8d57adf1d32c9bbed3d *html/AbundanceMetadata-class.html
f341cfdb76654a584171c101fade86fc *html/BgeeCall.html
c9c3897f07928aa0b2b4e83ced9cef60 *html/BgeeMetadata-class.html
fad2d142871c1d74e413b1fe690eb261 *html/KallistoMetadata-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
07d6a5f30a94b0b89517d7b69c6d5325 *html/UserMetadata-class.html
268d1ab69b0e5efeac1b731e8bc47c3c *html/create_kallisto_index.html
c29fa9e688f8677c0d626cce73d65252 *html/download_fasta_intergenic.html
d020a44179498b5dc02f6bf1ac9b63ff *html/download_kallisto.html
574b603ddc624f1934691767e460e32d *html/generate_calls_workflow.html
48b1c5d6fd68bb91a955900e666c40fd *html/generate_presence_absence.html
94d996d95f4f787e8ceee55ca9f93a95 *html/generate_slurm_calls.html
a19f8ec8c36a2673b4b5aced6c56e3a3 *html/generate_slurm_indexes.html
c7a219d624f6de32e16df3b47e340a35 *html/getIntergenicPrefix.html
a6aa51bf0b8bc6fef90ac16dffb1d943 *html/getIntergenicRelease.html
df5a607bed3cc5832a386b91e83b2f95 *html/getRunIds.html
25b284a2f480e9f648cf34bf538b0ab6 *html/getSimpleArborescence.html
e8b5199048676924b8f74398be0d3cbb *html/getWorkingPath.html
7ba1cf7b3cbbd75aab222269364f5a3f *html/get_summary_stats.html
8010ff36dca9fa8dc7b27bebe42b1697 *html/list_bgee_ref_intergenic_species.html
9d57b4dc666e1064f29b10ea137f6d64 *html/list_community_ref_intergenic_species.html
65ff4da96e014095d8ee6fbbd922254a *html/list_intergenic_release.html
1e2c930bf0b9f116af3f5da16a8c196f *html/merge_transcriptome_and_intergenic.html
2a254d3801037eda16d6e3f3a600307f *html/merging_libraries.html
caf4b9752636a8eefad3207cbe39eaa0 *html/run_kallisto.html
fcec632f9a24e39c0c6148526718d022 *html/run_tximport.html
f31282a1991b40ba0ed17ba1b8ca70f6 *html/setAnnotationFromFile.html
155d2ad83c44a52cfa3d016ee14f2d18 *html/setAnnotationFromObject.html
68ca49fe187cd91b73db49838f4744a9 *html/setIntergenicRelease.html
8c59556982651e9077a4b8cfedfabd14 *html/setOutputDir.html
a537e366691772592203c84d5be29e99 *html/setRNASeqLibPath.html
2b939c692972d1f72e7913002a24b376 *html/setRunIds.html
80fdd4a17d4bc1c467dac676d3f2e82b *html/setSimpleArborescence.html
28a951099a98da7a30dd4e04d0478bde *html/setTranscriptomeFromFile.html
853bf8e3e0ac5922ec1863860e02e884 *html/setTranscriptomeFromObject.html
138e195f370683a05e2eb40f2145caa9 *html/setWorkingPath.html
003f776c2a8dc8f771f061dbf10e448f *userMetadataTemplate.tsv
74ed09d98ab12046b7591e9a2c4ace13 *userMetadataTemplate_merging.tsv
