exampleSCE {BayesSpace} | R Documentation

## Create minimal `SingleCellExperiment` for documentation examples.

### Description

Create minimal `SingleCellExperiment` for documentation examples.

### Usage

    exampleSCE(nrow = 8, ncol = 12, n_genes = 100, n_PCs = 10)

### Arguments

`nrow` | Number of rows of spots
`ncol` | Number of columns of spots
`n_genes` | Number of genes to simulate
`n_PCs` | Number of principal components to include

### Details

Inspired by scuttle's `mockSCE()`.

### Value

A SingleCellExperiment object with simulated counts, corresponding logcounts and PCs, and positional data in `colData`. Spots are distributed over an (`nrow` x `ncol`) rectangle.

### Examples

    set.seed(149)
    sce <- exampleSCE()

[Package BayesSpace version 1.2.1 Index]