12b612d8f44403bbeb5131c86834548b *CITATION
36b14be24c0dca6a0c26d20521539e8a *DESCRIPTION
1b45c26aae1f931379e5d33e7480f82c *INDEX
f1d6c0e8c202b079ed4d4335f0b7cacb *Meta/Rd.rds
c1f708d15d8977c3f48db90b335a0803 *Meta/data.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
795a5d1192e2ffcd8fff16595e640e6e *Meta/hsearch.rds
4d959eee002aa441c04bf80c82dc82ac *Meta/links.rds
89465063020775384aedb4a256122e75 *Meta/nsInfo.rds
4573dba53c105bf7a7f73dcdc02d23a0 *Meta/package.rds
3f3ddcc2d197e89a73150d679eeaeead *Meta/vignette.rds
8266d81f797b7c152fca7d2d0b62780f *NAMESPACE
bf57917e041c9a85036aa15108eeb7f2 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/BaalChIP
948e9fa661fc1ff9900ed98d9257b6e8 *R/BaalChIP.rdb
6db40fdcedb10db7b6900aa45e73bf2f *R/BaalChIP.rdx
62f7fad25e96ba4a262bc2445f147b9c *data/Rdata.rdb
5f1639f97440d23493af430697056a8e *data/Rdata.rds
6006311341170a1584c364cfc7ee0a53 *data/Rdata.rdx
238836dcba18728bd32c69aa762eca44 *data/datalist
05f88fbb53fea8e40897027da77b8ad8 *doc/BaalChIP.R
d150e9563a6eaff6465ff1abb9fa974c *doc/BaalChIP.Rmd
e5064d90a50eb661a22d7d5d731a1df8 *doc/BaalChIP.html
a0cd49b193285b36eff89c7c1cf739b5 *doc/index.html
f3740b5b23040b009ef3773971635469 *extra/get.overlaps.v2_chrXY.perl
2839f9d957e8408f360a73c807dc577d *extra/run_simulations.sh
60a5dd8af3212a3cb7f2ec05d2a1c161 *help/AnIndex
917932cfd31ade1bf56b4e4c31fe6d14 *help/BaalChIP.get,BaalChIP-method.html
917932cfd31ade1bf56b4e4c31fe6d14 *help/BaalChIP.get.html
d48317be8f19ec96efca51d0cbfffb3f *help/BaalChIP.html
67337481ef6ac695d46b65bb90da9b60 *help/BaalChIP.rdb
b0956269e8b16a05ac8b8858946875b4 *help/BaalChIP.rdx
72e3bbc7d694612b82e81c11755e6335 *help/BaalChIP.report,BaalChIP-method.html
72e3bbc7d694612b82e81c11755e6335 *help/BaalChIP.report.html
67a91f28e0f991fba1423a3d318bcfb3 *help/BaalChIP.run,BaalChIP-method.html
67a91f28e0f991fba1423a3d318bcfb3 *help/BaalChIP.run.html
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71b445328f2d81b7eed2862275279269 *help/ENCODEexample.html
8aa3d00ef962f3bbf770e7039c15d525 *help/FAIREexample.html
666a599ae1ccb5e17f832455da933024 *help/QCfilter,BaalChIP-method.html
666a599ae1ccb5e17f832455da933024 *help/QCfilter.html
ee9ebc17f7811600125ffdf7d0d6b0f6 *help/UniqueMappability50bp_hg19.html
55ab66310b9d408f04aa9c6799eda526 *help/adjustmentBaalPlot,BaalChIP-method.html
55ab66310b9d408f04aa9c6799eda526 *help/adjustmentBaalPlot.html
ef14e8d94a90e17a7984e052c0cb716e *help/aliases.rds
7fcb61e2bb2ecd4d176d5239f51c53ff *help/alleleCounts,BaalChIP-method.html
7fcb61e2bb2ecd4d176d5239f51c53ff *help/alleleCounts.html
3eaf3d916371fa71af3cca0057ec264e *help/blacklist_hg19.html
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ea95156c1215604972aa31270c7e62a9 *help/filter1allele.html
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b10a500fb5bc9f1efe568c1c63c5cf49 *help/filterIntbias.html
fc270d078b87244a659fd0cfc907d592 *help/getASB,BaalChIP-method.html
fc270d078b87244a659fd0cfc907d592 *help/getASB.html
0399629ac56c8fd765e93366b535a856 *help/mergePerGroup,BaalChIP-method.html
0399629ac56c8fd765e93366b535a856 *help/mergePerGroup.html
faf2e45d2c1627d6c7a3d27370f46771 *help/paths.rds
6abf5962d2984b651561e13e3d27456c *help/pickrell2011cov1_hg19.html
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60778fa78d1f32fd07a216a3d92a2ec9 *help/plotQC.html
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1c7f4dac2e612c8fe99d2f2d2b688e1d *help/plotSimul.html
4d684c6c834cef87c6c42408173cc3c3 *help/summaryASB,BaalChIP-method.html
4d684c6c834cef87c6c42408173cc3c3 *help/summaryASB.html
7f2f8bad0ca2b006be7c0bfb787fa20a *help/summaryQC,BaalChIP-method.html
7f2f8bad0ca2b006be7c0bfb787fa20a *help/summaryQC.html
13678fd02342aef1819fc0ed1742590d *html/00Index.html
17a2a79f10fc2d6824eaaadf8b1c1aa2 *html/BaalChIP.get.html
e9ce26d0e23a6a4b2e7e30632033d433 *html/BaalChIP.html
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94fb0eac925cd023143c43e3a5ef7ea4 *html/BaalChIP.run.html
f87a749ea938135f011fa38409d6833e *html/BaalObject.html
511f1c2904617d116ca3a4667b89f757 *html/ENCODEexample.html
d42522fc3de6209aecfef8b8073b795c *html/FAIREexample.html
7e58d643ae45ece442fc6f4c76508cba *html/QCfilter.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
414204885ae6d96d2f23f760ab6b3130 *html/UniqueMappability50bp_hg19.html
06e5848a177c95b3d3938cd0ec102989 *html/adjustmentBaalPlot.html
a99b593676f52b59922770826cf4f3a4 *html/alleleCounts.html
56e383dcd87e9153c2b631639bf6fe38 *html/blacklist_hg19.html
7f107f676adc9071422c5e10e13ef6c9 *html/filter1allele.html
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87dbf4167e826a909f312cd080f669c0 *html/getASB.html
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db5d5e4f95e51abe0fe94a7c9e128420 *html/summaryASB.html
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aef76ff89c48aba2836b3513c48f19f7 *test/AMOVC_hetSNP.txt
6f96297112143141b7722d1d8e1fd20d *test/GM12891_hetSNP.txt
14febf61389ef198586e9074ba9eaca8 *test/MCF7_hetSNP.txt
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028c88d8fb7fef3f0442989943a78e51 *test/bamFiles/GM12891_PAX5_Rep1.bam
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91983547913597ab2053ab19fe64a248 *test/bamFiles/GM12891_POL2_Rep1.bam
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7a22cac3de49546054ef8f8df82a42a4 *test/bamFiles/GM12891_PU1_Rep2.bam
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2f061f9fa55774118e1bf2a5a1ac963b *test/bamFiles/MCF7_POL2_Rep1.bam
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9dc0992886e0eec82f9c78ae1ed98633 *test/bamFiles/MCF7_STAT3_Rep1.bam
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18bac19354572692976bcc91e61b7118 *test/simuloutput/c67c6ec6c433_snplist.txt
78e0e36e57a587d0fa71f43259726e34 *unitTests/test_get_allele_counts.R
