read_velocity_output {BUSpaRse} | R Documentation

## Read intronic and exonic matrices into R

### Description

Read intronic and exonic matrices into R

### Usage

    read_velocity_output(spliced_dir, unspliced_dir, spliced_name, unspliced_name)

### Arguments

`spliced_dir` | Directory with `mtx` file for UMI counts of spliced transcripts.
`unspliced_dir` | Directory with `mtx` file for UMI counts of unspliced transcripts.
`spliced_name` | The files in the splicedd directory should be <spliced_name>.mtx, <spliced_name>.genes.txt, and <spliced_name>.barcodes.txt.
`unspliced_name` | The files in the unsplicedd directory should be <unspliced_name>.mtx, <unspliced_name>.genes.txt, and <unspliced_name>.barcodes.txt.

### Value

A list of two dgCMatrix with barcodes as column names and genes as row names. The elements of the list will be `spliced` and `unspliced`.

### Examples

    # Internal toy data used for unit testing
    toy_path <- system.file("testdata", package = "BUSpaRse")
    m <- read_velocity_output(toy_path, toy_path,
      spliced_name = "genes",
      unspliced_name = "genes")

[Package BUSpaRse version 1.6.1 Index]