REF3UTR {APAlyzer} | R Documentation

## REF3UTR, build reference regions for 3'UTR PASs

### Description

Build 3'UTR PAS Reference for distal and proximal PAS.

### Usage

        REF3UTR(refUTR)

### Arguments

`refUTR` | a dataframe containing 6 colmuns for 3'UTR PASs: 'gene_symbol', 'Chrom', 'Strand', 'Proximal', 'Distal', 'cdsend'

### Value

The function `REF3UTR()` returns a genomic ranges of aUTR(pPAS to dPAS) and cUTR(cdsend to pPAS) regions for each gene

### Author(s)

Ruijia Wang

### Examples

    ## build Reference ranges for 3'UTR PASs in mouse
    	library(repmis)
    	URL="https://github.com/RJWANGbioinfo/PAS_reference_RData/blob/master/"
    	file="mm9_REF.RData"
    	source_data(paste0(URL,file,"?raw=True"))
        refUTRraw=refUTRraw[which(refUTRraw$Chrom=='chr19'),]
        UTRdbraw=REF3UTR(refUTRraw)

[Package APAlyzer version 1.6.0 Index]