AMARETTO_EvaluateTestSet {AMARETTO} | R Documentation

## AMARETTO_EvaluateTestSet

### Description

Code to evaluate AMARETTO on a new gene expression test set. Uses output from AMARETTO_Run() and CreateRegulatorData().

### Usage

    AMARETTO_EvaluateTestSet(AMARETTOresults = AMARETTOresults,
      MA_Data_TestSet = MA_Data_TestSet,
      RegulatorData_TestSet = RegulatorData_TestSet)

### Arguments

`AMARETTOresults` | AMARETTO output from AMARETTO_Run().
`MA_Data_TestSet` | Gene expression matrix from a test set (that was not used in AMARETTO_Run()).
`RegulatorData_TestSet` | Test regulator data from CreateRegulatorData().

### Value

result

### Examples

    data('ProcessedDataLIHC')
    AMARETTOinit <- AMARETTO_Initialize(ProcessedData = ProcessedDataLIHC,
                                        NrModules = 2, VarPercentage = 50)

    AMARETTOresults <- AMARETTO_Run(AMARETTOinit)
    AMARETTOtestReport <- AMARETTO_EvaluateTestSet(AMARETTOresults = AMARETTOresults,
                                                   MA_Data_TestSet = AMARETTOinit$MA_matrix_Var,
                                                   RegulatorData_TestSet = AMARETTOinit$RegulatorData)

[Package AMARETTO version 1.8.0 Index]