CheckArguments_Impute {ADImpute} | R Documentation

## Argument check to Impute()

### Description

`CheckArguments_Impute` checks whether the arguments passed to `Impute` are correct.

### Usage

    CheckArguments_Impute(data, method.choice, do, tr.length, labels,
    cell.clusters, true.zero.thr, drop_thre)

### Arguments

`data` | matrix; raw counts (genes as rows and samples as columns)
`method.choice` | character; best performing method in training data for each gene
`do` | character; choice of methods to be used for imputation. Currently supported methods are `'Baseline'`, `'DrImpute'`, `'Network'`, and `'Ensemble'`. Defaults to `'Ensemble'`. Not case-sensitive. Can include one or more methods. Non-supported methods will be ignored.
`tr.length` | matrix with at least 2 columns: 'hgnc_symbol' and 'transcript_length'
`labels` | character; vector specifying the cell type of each column of `data`
`cell.clusters` | integer; number of cell subpopulations
`true.zero.thr` | if set to NULL (default), no true zero estimation is performed. Set to numeric value between 0 and 1 for estimation. Value corresponds to the threshold used to determine true zeros: if the probability of dropout is lower than `true.zero.thr`, the imputed entries are set to zero.
`drop_thre` | numeric; between 0 and 1 specifying the threshold to determine dropout values

### Value

NULL object

[Package ADImpute version 1.2.0 Index]