Package: GGtools
Title: software and data for analyses in genetics of gene expression
Version: 5.25.3
Author: VJ Carey <stvjc@channing.harvard.edu>
Description: software and data for analyses in genetics of gene expression
	and/or DNA methylation
Suggests: GGdata, illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP144.GRCh37,
        multtest, aod, rmeta
Depends: R (>= 2.14), GGBase (>= 3.19.7), data.table, parallel,
        Homo.sapiens
Imports: methods, utils, stats, BiocGenerics (>= 0.25.1), snpStats, ff,
        Rsamtools, AnnotationDbi, Biobase, bit, VariantAnnotation,
        hexbin, rtracklayer, Gviz, stats4, S4Vectors (>= 0.9.25),
        IRanges, GenomeInfoDb, GenomicRanges (>= 1.29.6), iterators,
        Biostrings, ROCR, biglm, ggplot2, reshape2
Enhances: MatrixEQTL, foreach, doParallel, gwascat
Maintainer: VJ Carey <stvjc@channing.harvard.edu>
License: Artistic-2.0
biocViews: Genetics, GeneExpression, GeneticVariability, SNP
LazyLoad: yes
Packaged: 2020-07-02 22:45:04 UTC; biocbuild
Collate: AllClasses.R AllGenerics.R eqtlTests.R managers.R topFeats.R
        gwSnpTests.R snpsCisToGenes.R relocate.R topSnps.R
        snplocsDefault.R transutils.R vcfutils.R eqtlEstimates.R
        alleq.R meta.R eqME.R meta.all.R best.trans.eQTLs.R
        meta.transScores.R summInfra.R bindmaf.R fdr.all.cis.R pifdr.R
        getFDR.R cisConfig.R thinclass.R harvest.R scoredist.R binqq.R
        gffprocess.R cisEqTools.R modutils.R seqinfo.R pureSensSoft.R
        cisa.R scan.R basicappraise.R Eqappr.R
git_url: https://git.bioconductor.org/packages/GGtools
git_branch: master
git_last_commit: 4425f3d
git_last_commit_date: 2020-07-02
Date/Publication: 2020-07-02
NeedsCompilation: no
