getCandidates,GeneOntologyFilter-method {trena} | R Documentation

## Get candidate genes using a gene ontology filter

### Description

Get candidate genes using a gene ontology filter

### Usage

    ## S4 method for signature 'GeneOntologyFilter'
    getCandidates(obj)

### Arguments

`obj` | An object of class GeneOntologyFilter

### Value

A list, where one element a character vector of transcription factors that match the GO term and the other is an empty data frame.

### See Also

`GeneOntologyFilter`

Other getCandidate Methods: `getCandidates,FootprintFilter-method`, `getCandidates,HumanDHSFilter-method`, `getCandidates,VarianceFilter-method`, `getCandidates()`

### Examples

    # Make a filter for "transcription, DNA-templated" and use it to filter candidates
    library(org.Hs.eg.db)
    goFilter <- GeneOntologyFilter(org.Hs.eg.db, GOTerm="GO:0006351")
    candidates <- getCandidates(goFilter)

[Package trena version 1.12.1 Index]