print.traseR {traseR} | R Documentation

## Print the outcome of taSNP enrichment analyses

### Description

Print the outcome of taSNP enrichment analyses. Print the overall taSNP enrichment, trait-specific taSNP enrichment,trait-class-specific taSNP enrichment.

### Usage

    	## S3 method for class 'traseR'
    print(x,isTopK1=FALSE,topK1=10,isTopK2=FALSE,topK2=10,trait.threshold=10,traitclass.threshold=10,...)

### Arguments

`x` | Object returned from `traseR`
`isTopK1` | If isTopK1 is TRUE, topK1 traits are printed; otherwise, traits with p-value below Bonferroni correction threshold are printed. Default is FALSE.
`topK1` | Top K1 traits are printed. Default is 10.
`isTopK2` | If isTopK2 is TRUE, topK2 trait class are printed; otherwise, trait class with p-value below Bonferroni correction threshold are printed. Default is FALSE.
`topK2` | Top K2 trait class are printed. Default is 10.
`trait.threshold` | Traits above this threshold are reported. Default is 10.
`traitclass.threshold` | Trait class above this threshold are reported. Default is 10.
`...` | Other parameters to `print`

### Value

Print a data frame of traits ranked by p-value

### Author(s)

Li Chen <li.chen@emory.edu>, Zhaohui S.Qin<zhaohui.qin@emory.edu>

### Examples

    	data(taSNP)
    	data(Tcell)
    	x=traseR(snpdb=taSNP,region=Tcell)
    	print(x)

[Package traseR version 1.20.0 Index]