scaleTomo {tomoda} | R Documentation

## Scale data

### Description

Scale the normalized read count in a `SummarizedExperiment` object.

### Usage

    scaleTomo(object)

### Arguments

`object` | A `SummarizedExperiment` object.

### Details

This function should be run for `SummarizedExperiment` object with normalized read count matrix. The normalized read counts of each gene are subjected to Z score transformation across sections.

### Value

A `SummarizedExperiment` object with scaled read count matrix saved in assay `'scaled'`.

### Examples

    data(zh.data)
    zh <- createTomo(zh.data, scale=FALSE)
    zh <- scaleTomo(zh)

[Package tomoda version 1.0.0 Index]