sBMH {supraHex} | R Documentation

## Function to identify the best-matching hexagons/rectangles for the input data

### Description

`sBMH` is supposed to identify the best-matching hexagons/rectangles (BMH) for the input data.

### Usage

    sBMH(sMap, data, which_bmh = c("best", "worst", "all"))

### Arguments

`sMap` | an object of class "sMap" or a codebook matrix
`data` | a data frame or matrix of input data
`which_bmh` | which BMH is requested. It can be a vector consisting of any integer values from [1, nHex]. Alternatively, it can also be one of "best", "worst" and "all" choices. Here, "best" is equivalent to 1, "worst" for nHex, and "all" for seq(1,nHex)

### Value

a list with following components:

- `bmh`: the requested BMH matrix of dlen x length(which_bmh), where dlen is the total number of rows of the input data

- `qerr`: the corresponding matrix of quantization errors (i.e., the distance between the input data and their BMH), with the same dimensions as "bmh" above

- `mqe`: the mean quantization error for the "best" BMH

- `call`: the call that produced this result

### Note

"which_bmh" upon request can be a vector consisting of any integer values from [1, nHex]

### See Also

`sPipeline`

### Examples

    # 1) generate an iid normal random matrix of 100x10
    data <- matrix( rnorm(100*10,mean=0,sd=1), nrow=100, ncol=10)

    # 2) from this input matrix, determine nHex=5*sqrt(nrow(data))=50,
    # but it returns nHex=61, via "sHexGrid(nHex=50)", to make sure a supra-hexagonal grid
    sTopol <- sTopology(data=data, lattice="hexa", shape="suprahex")

    # 3) initialise the codebook matrix using "uniform" method
    sI <- sInitial(data=data, sTopol=sTopol, init="uniform")

    # 4) define trainology at "rough" stage
    sT_rough <- sTrainology(sMap=sI, data=data, stage="rough")

    # 5) training at "rough" stage
    sM_rough <- sTrainBatch(sMap=sI, data=data, sTrain=sT_rough)

    # 6) define trainology at "finetune" stage
    sT_finetune <- sTrainology(sMap=sI, data=data, stage="finetune")

    # 7) training at "finetune" stage
    sM_finetune <- sTrainBatch(sMap=sM_rough, data=data, sTrain=sT_rough)

    # 8) find the best-matching hexagons/rectangles for the input data
    response <- sBMH(sMap=sM_finetune, data=data, which_bmh="best")

[Package supraHex version 1.28.2 Index]