kersplatSimulate {splatter} | R Documentation

## Kersplat simulation

### Description

Simulate scRNA-seq count data using the Kersplat model

### Usage

    kersplatSimulate(
      params = newKersplatParams(),
      sparsify = TRUE,
      verbose = TRUE,
      ...
    )

### Arguments

`params` | KersplatParams object containing simulation parameters.
`sparsify` | logical. Whether to automatically convert assays to sparse matrices if there will be a size reduction.
`verbose` | logical. Whether to print progress messages
`...` | any additional parameter settings to override what is provided in `params`.

### Details

This functions is for simulating data in a single step. It consists of a call to `kersplatSetup` followed by a call to `kersplatSample`. Please see the documentation for those functions for more details of the individual steps.

### Value

SingleCellExperiment containing simulated counts and intermediate values

### See Also

`kersplatSetup`, `kersplatSample`

### Examples

    if (requireNamespace("igraph", quietly = TRUE)) {
        sim <- kersplatSimulate
    }

[Package splatter version 1.14.1 Index]