filterTrack {sojourner} | R Documentation

## filterTrack

### Description

methods for filter and trim tracks based on track length.

### Usage

    filterTrack(trackll,filter=c(min=7,max=Inf))
    trimTrack(trackll,trimmer=c(min=1,max=32))
    trackLength(trackll)

### Arguments

`trackll` | a list of track lists.
`filter` | range of possible track lengths to keep
`trimmer` | range of track lengths allowed in output, otherwise trimmed.

### Details

filterTrack() is used to filter out tracks that has length within a specified range (default 7~Inf). On the other hand, despite the lengths of tracks, trimTrack() is used to trim /cutoff all tracks to a specified range (default 1~32).

### Value

- trackll filtered or trimmed tracks.

- len list of track lengths.

### Examples

    folder=system.file('extdata','SWR1',package='sojourner')
    trackll=createTrackll(folder=folder, input=3)

    trackll.filter=filterTrack(trackll,filter=c(7,Inf))
    trackll.trim=trimTrack(trackll,trimmer=c(1,20))

    # see the min and max length of the trackll
    # trackLength() is a helper function output track length of trackll
    lapply(trackLength(trackll),min)
    lapply(trackLength(trackll.filter),min)

    lapply(trackLength(trackll),max)
    lapply(trackLength(trackll.trim),max)

[Package sojourner version 1.4.2 Index]