plot_variant_list {seqCAT} | R Documentation

## Plot known variants list

### Description

Plot a genotype grid from a list of known variants

### Usage

    plot_variant_list(variant_list, legend = TRUE, legend_size = 22,
      text_size = 14, palette = c("#4e8ce4", "#a6c6f2", "#999999",
      "#cccccc"))

### Arguments

`variant_list` | The data containing the variants (dataframe)
`legend` | Show a legend for the genotype colours (boolean)
`legend_size` | Size of the legend (numeric).
`text_size` | Text size for axes and legend (numeric).
`palette` | Nucleotide colour palette (4-element character vector)

### Details

This function creates publication-ready plots from lists of known variants, taking a dataframe containing all the genotypes (on "A1/A2" format) for each sample (columns) and variant (row names).

### Value

A ggplot2 graphical object.

### Examples

    # Load test variant list
    data(test_variant_list)

    # Plot each variant's genotype per sample
    genotype_grid <- plot_variant_list(test_variant_list)

[Package seqCAT version 1.12.0 Index]