f2197fba1e4de84ba27c7aa43c4966a3 *CITATION
0ae33acd55ce9f5d6b115403e6a17104 *DESCRIPTION
06e33caa0827cb8be3b19dde72f3b115 *INDEX
05d37543253550bff449ddea8a68ef5b *Meta/Rd.rds
d2ef363b29c01c1ca024d9a4ace2d9b3 *Meta/data.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
49ba712c1c68d18391f856bf35951e91 *Meta/hsearch.rds
b58bb95da81f3c4dc708614c8ef5d248 *Meta/links.rds
f52192fdddea4a0ea7b268f5aa4d8501 *Meta/nsInfo.rds
38005aa3d9306b21714d60a18558dadf *Meta/package.rds
1792ca4f23c9f6669731b6ab19813bde *Meta/vignette.rds
3c58e51ed31e3e39e329547d0de938fe *NAMESPACE
44ae129a9f93f36c44c550c510554cd2 *NEWS.Rd
d6c68f1fe41ced6e98a766a3757313da *R/scPipe
2df693106e5b24682ffe1af994749024 *R/scPipe.rdb
8851418e2a15d29a3abf26ec03221c6e *R/scPipe.rdx
1dc17379efee0dc44aee270095903ff5 *data/sc_sample_data.RData
2594a9728f0d35790ec31657b0f9c880 *data/sc_sample_qc.RData
d2ef606b4d80afde2dcc99daa120f8cd *doc/index.html
84352518295714a7df14e8c578552fb4 *doc/scPipe_tutorial.R
32774cd76c26cd7e96192c28b9e647af *doc/scPipe_tutorial.Rmd
67a9c7baa56cc99be1ccd3b75d975af1 *doc/scPipe_tutorial.html
339e0225f3294bf2bf89ac33d71a73c2 *extdata/ERCC92.fa
6e4cb84dc35b55f6c26e244c3d518583 *extdata/ERCC92_anno.gff3
e6007becb38885068ee4c1569f11676c *extdata/barcode_anno.csv
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4b69e9071aaebe7e0f0b72faba999836 *extdata/ensembl_hg38_chrY.gtf.gz
2775eff980dad9481fe7170ef11b3b29 *extdata/ensembl_y_tiny.gtf.gz
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220922b0d0b25aa599770ca139e2d2e1 *extdata/ref_tiny_anno.gff3.gz
14fb7c015fbeae5a49a06a3447bd864c *extdata/report_template.Rmd
60ecd0d30f4bb5aee8a052a6051d2e1c *extdata/report_template_slim.Rmd
4f72dbb833c45e8d9417b4bc3a0b4716 *extdata/simu_R1.fastq.gz
6b555e64cd9a0e3dbe416284e857fae2 *extdata/simu_R2.fastq.gz
ed4dd019106f776802703cc17ca2ba4d *help/AnIndex
396ae6fd5f829ea3f508ff61ac75636b *help/aliases.rds
e1b4605a8620a6b37207f64cd26fe89c *help/paths.rds
4974d5b50e7a86ffa8f3781e61113da1 *help/scPipe.rdb
bf99b5318a1f2d310b755240435d76f9 *help/scPipe.rdx
0483b3edff61231cf923298e045c8f5f *html/00Index.html
f77ad4fba0e79225e516a383e2b3ce50 *html/QC_metrics.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
6902595dd0141252de9391e9a66ae543 *html/UMI_dup_info.html
6cb5f554cac1e441096ca729eab3b581 *html/UMI_duplication.html
f7f9896aa7c5b4669b8ff096b79bb386 *html/anno_import.html
1a4e37f920f0821161e0358d11e5f591 *html/anno_to_saf.html
cd4536b31409596612d5d2e3da3cfaaf *html/calculate_QC_metrics.html
a864b58ef3f04e596f1b7c275edd0a8d *html/cell_barcode_matching.html
83bf975e25db3684c527bdb11e084014 *html/convert_geneid.html
babcb2266a61b53d51a80e88922e4d58 *html/create_processed_report.html
4416b2120833622a68106322c03396d5 *html/create_report.html
537a996e568550221b4a0839db0c905d *html/create_sce_by_dir.html
e07ee6e90e7665b25b82a92b530cb3ff *html/demultiplex_info.html
46b23d71cb981603f7fdd0f09f1d322f *html/detect_outlier.html
a22b00344fec9a555a25fa231bd26bf6 *html/gene_id_type.html
f767cab7ae3a40adfa18276fafbf63f6 *html/get_ercc_anno.html
fa819a945d2907435ee7b3688fb430df *html/get_genes_by_GO.html
d453db6ac57482d7d662007065360bbf *html/get_read_str.html
f1ed5f5e056e4ce91dccf89eedc2be78 *html/organism.html
598ed5dbca72591efc5d6063facddea7 *html/plot_QC_pairs.html
f2b68264aaae8519825b2337cc5c7955 *html/plot_UMI_dup.html
a5867c311db9b9ce4ed32af76257a4ca *html/plot_demultiplex.html
4bbb1fbb6afe8de1095ed4f8e7938250 *html/plot_mapping.html
f205a7eb52d3dbbb94dfe31ccd28a801 *html/remove_outliers.html
d0c73fe87aeacc59ab28e2eba9fc635b *html/scPipe.html
51f4932dd55931b56bfe3130bde7fbb1 *html/sc_correct_bam_bc.html
9004a0ddbd8d42c26936bb724a13a4d5 *html/sc_count_aligned_bam.html
9ddd51df3c710e3d7f60433af69c6eb6 *html/sc_demultiplex.html
c4592b2bb299e1bc77fd6fdeaaea58d6 *html/sc_demultiplex_and_count.html
d84ebffa8196fe8cd6c9440799afe6be *html/sc_detect_bc.html
e98ecef86867d0afaff26f32798a12e8 *html/sc_exon_mapping.html
383c2c87dfde9b968e7c1d57a3e74c5e *html/sc_gene_counting.html
f600aa99becb283531734326f76a88d5 *html/sc_sample_data.html
f2aa8dde4f4a23e59a34ae0db9a9382a *html/sc_sample_qc.html
de64af6e6d786fef3b06f9ecb4ed72a2 *html/sc_trim_barcode.html
f5350c787defac3fcff9173a987a3439 *libs/i386/scPipe.dll
b722a9ca4ffa78592f9a67c7fc53d2fe *libs/x64/scPipe.dll
e17bcd270318aaaabf8568c328e3d59c *scPipe.png
a4e7b825ee1d624e008b5bcb4659e78d *workflow.png
