doubletThresholding {scDblFinder} | R Documentation

## doubletThresholding

### Description

Sets the doublet scores threshold; typically called by `scDblFinder`.

### Usage

    doubletThresholding(d, dbr = 0.025, dbr.sd = 0.015, local = FALSE)

### Arguments

`d` | A data.frame of properties of real and artificial cells, as produced by 'scDblFinder(returnType="table")'.
`dbr` | The expected (mean) doublet rate.
`dbr.sd` | The standard deviation of the doublet rate, representing the uncertainty in the estimate.
`local` | Logical; whether to use local calibration (experimental feature!)

### Value

A scaler indicating the decided threshold.

### Examples

    sce <- mockDoubletSCE()
    d <- scDblFinder(sce, verbose=FALSE, returnType="table")
    th <- doubletThresholding(d, dbr=0.05)
    th$th

[Package scDblFinder version 1.4.0 Index]