testZeroes {scDD} | R Documentation

## testZeroes

### Description

Test for a difference in the proportion of zeroes between conditions for a specified set of genes

### Usage

    testZeroes(dat, cond, these = 1:nrow(dat))

### Arguments

`dat` | Matrix of single cell expression data with genes in rows and samples in columns.
`cond` | Vector of condition labels
`these` | vector of row numbers (gene numbers) to test for a difference in the proportion of zeroes.

### Details

Test for a difference in the proportion of zeroes between conditions that is not explained by the detection rate. Utilizes Bayesian logistic regression.

### Value

Vector of FDR adjusted p-values

[Package scDD version 1.14.0 Index]