ecdfAUC {sSeq} | R Documentation

## Draw Empirical Cumulative Density Function (ECDF) plot

### Description

This function is used to draw Empirical CDF plot. It relies on the trapz function in the caTools package. A user needs to install the caTool library first.

### Usage

    ecdfAUC(dd, col.line=NULL, main="ECDF", cex.leg=1, drawRef=FALSE,
           rm1=FALSE, lineType=NULL, addLeg=TRUE, xlab="p-value",
           ylab="ECDF", cex.axis=1.5, cex.main=1.8, cex.lab=1.2,
          axis.padj=c(-1, 1), lab.padj=c(-1.5, 1), lwd=1, box.lwd=1.2)

### Arguments

`dd` | A data frame of p-values in which a column represents the p-values or posterior probabilities resulted by a method.
`col.line` | A vector of color characters. The default is NULL and this function automatically assigns the color for each cover shown in the ECDF plot.
`main` | The title of the plot.
`cex.leg` | An integer specifying size of the legend in the the plot.
`drawRef` | If TRUE, then a gray 45 degree line will be added in the plot.
`rm1` | If users believe that the p-values equal to 1 belong to the different group of the others, and want to exclude them from the calculation of empirical CDF, then use rm1=TRUE.
`lineType` | A vector of integers indicating the type of lines used for the methods.
`addLeg` | If “TRUE" then a legend box with legend is added to the figure.
`xlab` | Label of x axis.
`ylab` | Label of y axis.
`cex.axis` | The size of labels on the axes.
`cex.main` | A characteristic string indicating the size of the main.
`cex.lab` | The size for the labels on x and y.
`axis.padj` | The perpendicular adjustment of ticks.
`lab.padj` | The perpendicular adjustment of labels for an axix.
`lwd` | The width of the line shown in a figure.
`box.lwd` | The width of the box line in a figure.

### Examples

    x<-data.frame(A=runif(100), B=rbeta(100, 0.5, 1.2))
    ecdfAUC(x);

[Package sSeq version 1.28.0 Index]