filterCDS {ribosomeProfilingQC} | R Documentation

## Filter CDS by size

### Description

Filter CDS by CDS size.

### Usage

    filterCDS(CDS, sizeCutoff = 100L)

### Arguments

`CDS` | Output of preparedCDS
`sizeCutoff` | numeric(1). Cutoff size for CDS. If the size of CDS is less than the cutoff, it will be filtered out.

### Value

A GRanges object with filtered CDS.

### Examples

    #library(GenomicFeatures)
    library(BSgenome.Drerio.UCSC.danRer10)
    #txdb <- makeTxDbFromGFF(system.file("extdata",
     #         "Danio_rerio.GRCz10.91.chr1.gtf.gz",
     #         package="ribosomeProfilingQC"),
     #         organism = "Danio rerio",
     #         chrominfo = seqinfo(Drerio)["chr1"],
     #         taxonomyId = 7955)
    #CDS <- prepareCDS(txdb)
    CDS <- readRDS(system.file("extdata", "CDS.rds",
                               package="ribosomeProfilingQC"))
    filterCDS(CDS)

[Package ribosomeProfilingQC version 1.2.1 Index]