ribor {ribor} | R Documentation

## ribor: A package for reading .ribo files

### Description

The 'ribor' package offers a suite of reading functions for the datasets present in a .ribo file and also provides some rudimentary plotting functions.

### Vignette

To get started with the ribor package, please see the vignette page at https://ribosomeprofiling.github.io/ribor/ribor.html.

### Related Tools

The paper associated with the Ribo ecosystem can be found at https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btaa028/5701654.

For more information on the preprocessing pipeline, please see the link to the source code at https://github.com/ribosomeprofiling/riboflow.

For more information on the .ribo file format, please see its documentation page at https://ribopy.readthedocs.io/en/latest/ribo_file_format.html.

For an alternative to ribor, please see a link to source code of ribopy, a python interface, at https://github.com/ribosomeprofiling/ribopy.

### Package Content

#### Generating a ribo object

`Ribo` to get started

#### Length Distribution

`get_length_distribution` to get length distribution counts

`plot_length_distribution` to plot the length distribution

#### Region Counts

`get_region_counts` to get region counts

`plot_region_counts` to plot the region counts

#### Metagene Coverage

`get_metagene` to get metagene site coverage

`get_tidy_metagene` to get a tidy format of the metagene site coverage

`plot_metagene` to plot the metagene site coverage

[Package ribor version 1.2.0 Index]